Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02855

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
3,168,467	+		MIT1002_02854	0.51	-1.5
3,168,467	+		MIT1002_02854	0.51	+0.7
3,168,467	+		MIT1002_02854	0.51	-1.9
3,168,475	-		MIT1002_02854	0.51	-0.6
3,168,475	-		MIT1002_02854	0.51	+1.0
3,168,518	-		MIT1002_02854	0.54	-0.0
3,168,523	-		MIT1002_02854	0.54	+0.9
3,168,563	+		MIT1002_02854	0.56	-1.8
3,168,667	+		MIT1002_02854	0.62	-0.2
3,168,758	+		MIT1002_02854	0.66	-0.2
3,168,795	-		MIT1002_02854	0.68	+1.3
3,168,881	+		MIT1002_02854	0.73	-0.2
3,168,881	+		MIT1002_02854	0.73	+0.6
3,168,884	-		MIT1002_02854	0.73	-0.3
3,168,888	-		MIT1002_02854	0.73	+1.2
3,168,888	-		MIT1002_02854	0.73	+1.1
3,168,889	-		MIT1002_02854	0.73	+1.3
3,168,907	+		MIT1002_02854	0.74	+1.1
3,168,908	+		MIT1002_02854	0.74	+0.3
3,168,916	-		MIT1002_02854	0.75	+1.8
3,168,916	-		MIT1002_02854	0.75	-0.1
3,168,916	-		MIT1002_02854	0.75	-0.3
3,168,942	+		MIT1002_02854	0.76	-0.9
3,168,976	-		MIT1002_02854	0.78	+1.7
3,168,990	-		MIT1002_02854	0.78	+0.9
3,169,004	+		MIT1002_02854	0.79	+1.1
3,169,004	+		MIT1002_02854	0.79	-2.3
3,169,012	-		MIT1002_02854	0.80	-2.0
3,169,012	-		MIT1002_02854	0.80	+1.3
3,169,024	+		MIT1002_02854	0.80	-0.1
3,169,047	+		MIT1002_02854	0.81	+1.1
3,169,047	+		MIT1002_02854	0.81	+1.1
3,169,052	+		MIT1002_02854	0.82	-0.7
3,169,055	-		MIT1002_02854	0.82	+0.8
3,169,057	+		MIT1002_02854	0.82	+0.1
3,169,057	+		MIT1002_02854	0.82	-0.9
3,169,057	+		MIT1002_02854	0.82	+0.1
3,169,060	-		MIT1002_02854	0.82	+0.0
3,169,062	+		MIT1002_02854	0.82	+1.5
3,169,065	-		MIT1002_02854	0.82	+0.0
3,169,065	-		MIT1002_02854	0.82	-0.6
3,169,065	-		MIT1002_02854	0.82	-0.4
3,169,067	+		MIT1002_02854	0.83	-0.2
3,169,067	+		MIT1002_02854	0.83	+0.9
3,169,074	+		MIT1002_02854	0.83	-0.1
3,169,116	+		MIT1002_02854	0.85	+1.2
3,169,116	+		MIT1002_02854	0.85	+1.3
3,169,188	+		MIT1002_02854	0.89	-4.1
3,169,196	-		MIT1002_02854	0.89	-0.3
3,169,196	-		MIT1002_02854	0.89	-3.0
3,169,196	-		MIT1002_02854	0.89	-0.1
3,169,247	-				+0.2
3,169,302	+				+0.1
3,169,302	+				-0.1
3,169,310	-				-0.1
3,169,317	+				-0.2
3,169,317	-				-2.2
3,169,319	+				-2.0
3,169,324	+				+0.7
3,169,324	+				-0.3
3,169,327	-				+2.2
3,169,327	-				-0.8
3,169,327	-				+0.2
3,169,327	-				+0.2
3,169,327	-				+0.7
3,169,332	-				-1.7
3,169,363	-				-0.5
3,169,414	+				-1.5
3,169,666	-		MIT1002_02855	0.24	-2.3
3,169,681	-		MIT1002_02855	0.26	-3.4
3,169,682	-		MIT1002_02855	0.26	-2.2
3,169,744	-		MIT1002_02855	0.32	-0.2
3,169,795	-		MIT1002_02855	0.36	+0.5
3,169,801	-		MIT1002_02855	0.37	+0.1
3,169,811	-		MIT1002_02855	0.38	-1.8
3,169,907	+		MIT1002_02855	0.46	-2.0
3,170,053	-		MIT1002_02855	0.59	+1.8
3,170,094	-		MIT1002_02855	0.63	-1.2
3,170,161	-		MIT1002_02855	0.69	+0.5
3,170,165	+		MIT1002_02855	0.70	-1.5
3,170,217	-		MIT1002_02855	0.74	-1.3
3,170,261	+		MIT1002_02855	0.78	-0.7
3,170,261	+		MIT1002_02855	0.78	+0.2
3,170,269	-		MIT1002_02855	0.79	+1.3
3,170,269	-		MIT1002_02855	0.79	+0.3
3,170,279	+		MIT1002_02855	0.80	+0.5
3,170,279	-		MIT1002_02855	0.80	+0.3
3,170,287	-		MIT1002_02855	0.81	+0.6
3,170,291	+		MIT1002_02855	0.81	-3.0
3,170,319	+		MIT1002_02855	0.83	-1.6
3,170,319	+		MIT1002_02855	0.83	+0.7
3,170,371	+		MIT1002_02855	0.88	-1.7
3,170,566	-				-1.2
3,170,586	-				+0.8
3,170,779	-		MIT1002_02856	0.27	+0.6
3,170,825	+		MIT1002_02856	0.31	+2.2
3,170,861	-		MIT1002_02856	0.35	-0.2
3,170,923	+		MIT1002_02856	0.41	-1.6
3,170,936	-		MIT1002_02856	0.42	+2.4
3,170,936	-		MIT1002_02856	0.42	+2.6
3,170,951	+		MIT1002_02856	0.44	-1.8
3,171,010	-		MIT1002_02856	0.49	-4.6
3,171,029	+		MIT1002_02856	0.51	+0.4
3,171,108	-		MIT1002_02856	0.59	+1.9
3,171,113	-		MIT1002_02856	0.59	+0.3
3,171,128	+		MIT1002_02856	0.61	+1.3
3,171,130	+		MIT1002_02856	0.61	-1.0
3,171,164	+		MIT1002_02856	0.64	+3.7
3,171,199	+		MIT1002_02856	0.68	-2.5
3,171,213	-		MIT1002_02856	0.69	-1.7
3,171,216	-		MIT1002_02856	0.69	+2.1
3,171,247	-		MIT1002_02856	0.73	-4.5
3,171,287	-		MIT1002_02856	0.76	+0.8
3,171,293	-		MIT1002_02856	0.77	+0.2
3,171,330	+		MIT1002_02856	0.81	-2.3
3,171,338	-		MIT1002_02856	0.81	+1.3
3,171,386	+		MIT1002_02856	0.86	-3.2
3,171,391	+		MIT1002_02856	0.87	-0.6
3,171,391	+		MIT1002_02856	0.87	-2.6
3,171,391	+		MIT1002_02856	0.87	+1.1
3,171,391	+		MIT1002_02856	0.87	+1.2
3,171,391	+		MIT1002_02856	0.87	-1.3
3,171,391	+		MIT1002_02856	0.87	+1.4
3,171,399	-		MIT1002_02856	0.87	-0.1
3,171,399	-		MIT1002_02856	0.87	-1.8
3,171,399	-		MIT1002_02856	0.87	-0.6
3,171,401	+		MIT1002_02856	0.88	-0.4
3,171,401	+		MIT1002_02856	0.88	-3.0
3,171,419	-		MIT1002_02856	0.89	+2.4
3,171,419	-		MIT1002_02856	0.89	-0.0
3,171,437	-				+2.3
3,171,465	+				-1.5