Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02740

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02739 and MIT1002_02740 are separated by 2 nucleotidesMIT1002_02740 and MIT1002_02741 are separated by 14 nucleotidesMIT1002_02741 and MIT1002_02742 overlap by 8 nucleotides MIT1002_02739: MIT1002_02739 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,040,426 to 3,041,370 _02739 MIT1002_02740: MIT1002_02740 - FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase, at 3,041,373 to 3,041,840 _02740 MIT1002_02741: MIT1002_02741 - Lipoprotein signal peptidase, at 3,041,855 to 3,042,403 _02741 MIT1002_02742: MIT1002_02742 - Isoleucine--tRNA ligase, at 3,042,396 to 3,045,215 _02742 Position (kb) 3041 3042Strain fitness (log2 ratio) -2 -1 0 1at 3040.389 kb on - strandat 3040.437 kb on + strandat 3041.408 kb on - strandat 3041.567 kb on - strand, within MIT1002_02740at 3041.567 kb on - strand, within MIT1002_02740at 3041.607 kb on - strand, within MIT1002_02740at 3041.707 kb on - strand, within MIT1002_02740at 3041.717 kb on - strand, within MIT1002_02740at 3041.724 kb on - strand, within MIT1002_02740at 3041.844 kb on - strandat 3041.844 kb on - strandat 3041.844 kb on - strandat 3041.844 kb on - strandat 3041.844 kb on - strandat 3041.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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3,040,389 - -2.5
3,040,437 + +1.1
3,041,408 - -0.5
3,041,567 - MIT1002_02740 0.41 +1.4
3,041,567 - MIT1002_02740 0.41 -0.6
3,041,607 - MIT1002_02740 0.50 +1.2
3,041,707 - MIT1002_02740 0.71 +0.3
3,041,717 - MIT1002_02740 0.74 -2.0
3,041,724 - MIT1002_02740 0.75 +0.7
3,041,844 - +1.0
3,041,844 - -1.9
3,041,844 - +0.4
3,041,844 - -1.2
3,041,844 - -0.9
3,041,904 - -1.3

Or see this region's nucleotide sequence