Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02483

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
2,769,237	-		MIT1002_02481	0.68	+0.7
2,769,252	-		MIT1002_02481	0.74	+0.6
2,769,252	-		MIT1002_02481	0.74	+1.1
2,769,314	-				+0.6
2,769,448	+		MIT1002_02482	0.18	+1.9
2,769,448	+		MIT1002_02482	0.18	+1.0
2,769,483	+		MIT1002_02482	0.24	+1.1
2,769,483	+		MIT1002_02482	0.24	+1.0
2,769,491	-		MIT1002_02482	0.26	-0.7
2,769,491	-		MIT1002_02482	0.26	-0.3
2,769,503	-		MIT1002_02482	0.28	+1.2
2,769,503	-		MIT1002_02482	0.28	+2.0
2,769,509	-		MIT1002_02482	0.29	+1.0
2,769,546	-		MIT1002_02482	0.36	-1.3
2,769,583	+		MIT1002_02482	0.42	-1.3
2,769,583	+		MIT1002_02482	0.42	-0.3
2,769,590	+		MIT1002_02482	0.44	+0.0
2,769,608	-		MIT1002_02482	0.47	+1.5
2,769,644	+		MIT1002_02482	0.54	-0.3
2,769,651	-		MIT1002_02482	0.55	+0.1
2,769,652	-		MIT1002_02482	0.55	-1.0
2,769,655	+		MIT1002_02482	0.56	+0.0
2,769,682	+		MIT1002_02482	0.60	-0.5
2,769,727	+		MIT1002_02482	0.69	-2.8
2,769,738	+		MIT1002_02482	0.71	+0.8
2,769,746	-		MIT1002_02482	0.72	-1.4
2,769,793	-		MIT1002_02482	0.81	+1.9
2,769,793	-		MIT1002_02482	0.81	-1.9
2,769,811	-		MIT1002_02482	0.84	+1.1
2,769,813	+		MIT1002_02482	0.84	+0.5
2,769,819	+		MIT1002_02482	0.85	-3.1
2,769,821	-		MIT1002_02482	0.86	-1.0
2,769,821	-		MIT1002_02482	0.86	-0.3
2,769,821	-		MIT1002_02482	0.86	-0.2
2,769,827	-		MIT1002_02482	0.87	+0.9
2,769,829	+		MIT1002_02482	0.87	+0.5
2,769,855	+				+0.5
2,769,855	+				+0.2
2,769,860	-				+1.4
2,769,860	-				+1.5
2,769,862	+				+2.6
2,769,862	+				-1.8
2,769,862	+				-0.6
2,769,862	+				-0.3
2,769,863	-				-0.4
2,769,870	-				-0.2
2,769,873	-				+0.3
2,769,889	-				+1.4
2,769,908	-				-0.4
2,769,917	-				+0.0
2,770,073	-				-0.5
2,770,077	+				+1.8
2,770,175	-				-1.5
2,770,187	-				-1.7
2,770,270	+				-0.2
2,770,294	+				+1.5
2,770,303	-				-2.9
2,770,373	-		MIT1002_02483	0.16	-0.3
2,770,397	-		MIT1002_02483	0.19	+1.5
2,770,583	-		MIT1002_02483	0.40	-0.3
2,770,583	-		MIT1002_02483	0.40	-2.6
2,770,605	+		MIT1002_02483	0.42	+2.2
2,770,613	-		MIT1002_02483	0.43	-0.9
2,770,639	+		MIT1002_02483	0.46	+1.8
2,770,669	+		MIT1002_02483	0.49	+1.3
2,770,694	+		MIT1002_02483	0.52	+0.2
2,770,742	-		MIT1002_02483	0.58	+0.4
2,770,756	+		MIT1002_02483	0.59	+0.2
2,770,771	-		MIT1002_02483	0.61	+1.2
2,770,838	+		MIT1002_02483	0.69	-0.7
2,770,972	+		MIT1002_02483	0.84	+1.7
2,770,977	+		MIT1002_02483	0.85	+1.4
2,771,024	-		MIT1002_02483	0.90	+0.7
2,771,064	+				+1.2
2,771,086	-				+0.3
2,771,163	+				-0.6
2,771,166	-				-0.2
2,771,193	+				-2.0
2,771,201	-				-3.8
2,771,226	-				+0.9
2,771,251	-				-0.3
2,771,251	-				+0.3
2,771,277	-				+0.5
2,771,287	-				-2.2
2,771,306	-				-0.8
2,771,317	+				+0.2
2,771,324	+		MIT1002_02484	0.10	+3.4
2,771,327	-		MIT1002_02484	0.11	-1.5
2,771,338	+		MIT1002_02484	0.11	+1.4
2,771,348	+		MIT1002_02484	0.12	+0.4
2,771,365	+		MIT1002_02484	0.13	-0.3
2,771,371	+		MIT1002_02484	0.14	+0.8
2,771,371	+		MIT1002_02484	0.14	-2.7
2,771,371	+		MIT1002_02484	0.14	+0.2
2,771,371	+		MIT1002_02484	0.14	-0.7
2,771,378	-		MIT1002_02484	0.14	+0.2
2,771,379	-		MIT1002_02484	0.14	-0.5
2,771,379	-		MIT1002_02484	0.14	+0.1
2,771,379	-		MIT1002_02484	0.14	-4.8
2,771,498	+		MIT1002_02484	0.23	-0.8
2,771,505	+		MIT1002_02484	0.24	-3.0
2,771,505	+		MIT1002_02484	0.24	+0.3
2,771,508	-		MIT1002_02484	0.24	-0.9
2,771,513	-		MIT1002_02484	0.24	-2.6
2,771,513	-		MIT1002_02484	0.24	+0.0
2,771,513	-		MIT1002_02484	0.24	-0.3
2,771,515	+		MIT1002_02484	0.25	-1.1
2,771,523	-		MIT1002_02484	0.25	-3.1
2,771,523	-		MIT1002_02484	0.25	-0.6
2,771,530	-		MIT1002_02484	0.26	-0.3
2,771,566	+		MIT1002_02484	0.28	-0.8
2,771,605	+		MIT1002_02484	0.31	+1.5
2,771,613	-		MIT1002_02484	0.32	-2.7
2,771,616	+		MIT1002_02484	0.32	+1.1
2,771,716	-		MIT1002_02484	0.39	+0.8
2,771,743	+		MIT1002_02484	0.41	-2.1
2,771,790	+		MIT1002_02484	0.45	-0.8
2,771,810	-		MIT1002_02484	0.46	+0.2
2,771,828	+		MIT1002_02484	0.48	+2.4
2,771,842	-		MIT1002_02484	0.49	-0.2
2,771,843	-		MIT1002_02484	0.49	-1.0
2,771,846	+		MIT1002_02484	0.49	-1.3
2,771,852	+		MIT1002_02484	0.49	-1.0
2,771,852	+		MIT1002_02484	0.49	-1.6
2,771,860	-		MIT1002_02484	0.50	-2.6
2,771,868	-		MIT1002_02484	0.50	-0.3
2,771,886	-		MIT1002_02484	0.52	-3.0
2,771,912	+		MIT1002_02484	0.54	-0.0
2,771,912	+		MIT1002_02484	0.54	-0.7
2,771,912	+		MIT1002_02484	0.54	-2.7
2,771,915	-		MIT1002_02484	0.54	+1.2
2,771,920	-		MIT1002_02484	0.54	+0.8
2,771,922	+		MIT1002_02484	0.54	+0.6
2,771,930	-		MIT1002_02484	0.55	+0.8
2,771,930	-		MIT1002_02484	0.55	-1.7
2,771,953	+		MIT1002_02484	0.57	-2.7
2,771,980	-		MIT1002_02484	0.59	-0.9
2,771,982	+		MIT1002_02484	0.59	-0.4
2,772,025	+		MIT1002_02484	0.62	-1.3
2,772,027	+		MIT1002_02484	0.62	+0.4
2,772,027	+		MIT1002_02484	0.62	-1.1
2,772,071	+		MIT1002_02484	0.65	-1.3
2,772,071	+		MIT1002_02484	0.65	-1.5
2,772,084	+		MIT1002_02484	0.66	-0.2