Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01859

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
2,069,004	+		MIT1002_01858	0.22	-3.1
2,069,010	-		MIT1002_01858	0.23	+0.2
2,069,035	+		MIT1002_01858	0.27	+0.3
2,069,053	+		MIT1002_01858	0.30	-1.5
2,069,061	-		MIT1002_01858	0.31	-2.1
2,069,068	+		MIT1002_01858	0.32	+0.1
2,069,111	-		MIT1002_01858	0.39	+0.3
2,069,125	+		MIT1002_01858	0.42	+0.1
2,069,125	+		MIT1002_01858	0.42	+0.4
2,069,133	-		MIT1002_01858	0.43	+1.2
2,069,133	-		MIT1002_01858	0.43	+1.0
2,069,133	-		MIT1002_01858	0.43	-0.9
2,069,133	-		MIT1002_01858	0.43	+0.9
2,069,133	-		MIT1002_01858	0.43	-0.1
2,069,140	-		MIT1002_01858	0.44	-0.3
2,069,161	+		MIT1002_01858	0.47	+0.4
2,069,161	+		MIT1002_01858	0.47	-1.5
2,069,161	+		MIT1002_01858	0.47	-0.3
2,069,169	-		MIT1002_01858	0.49	+2.1
2,069,241	-		MIT1002_01858	0.60	-0.7
2,069,254	-		MIT1002_01858	0.62	-1.2
2,069,256	-		MIT1002_01858	0.63	+0.7
2,069,261	-		MIT1002_01858	0.64	+1.2
2,069,319	+		MIT1002_01858	0.73	-0.1
2,069,418	+		MIT1002_01858	0.89	+0.3
2,069,434	+				+2.2
2,069,464	-				+0.5
2,069,496	-				-0.8
2,069,535	-				-3.0
2,069,602	+				-3.1
2,069,603	+				-1.8
2,069,644	-				-0.7
2,069,644	-				-2.9
2,069,664	+				-0.0
2,069,664	+				-2.0
2,069,664	+				-0.1
2,069,664	+				-1.7
2,069,672	-				+1.1
2,069,672	-				-2.2
2,069,672	-				-0.3
2,069,672	-				-2.4
2,069,683	+				+0.1
2,069,711	+				-0.8
2,069,824	+				-0.1
2,069,825	-				+1.5
2,069,832	-				+0.4
2,069,910	+				+0.9
2,069,918	-				+0.0
2,069,920	+				-1.0
2,069,928	-				+0.3
2,069,989	+				+3.5
2,069,998	+				+0.9
2,070,006	-				-0.7
2,070,176	+				-2.7
2,070,226	-				-2.7
2,070,304	+		MIT1002_01859	0.13	-0.8
2,070,361	-		MIT1002_01859	0.15	-0.7
2,070,361	-		MIT1002_01859	0.15	-1.8
2,070,378	+		MIT1002_01859	0.16	-1.7
2,070,378	+		MIT1002_01859	0.16	+0.5
2,070,378	+		MIT1002_01859	0.16	-0.3
2,070,378	+		MIT1002_01859	0.16	-0.1
2,070,386	-		MIT1002_01859	0.16	-1.7
2,070,386	-		MIT1002_01859	0.16	+0.7
2,070,386	-		MIT1002_01859	0.16	+0.7
2,070,518	+		MIT1002_01859	0.22	+0.6
2,070,533	-		MIT1002_01859	0.22	+0.0
2,070,550	-		MIT1002_01859	0.23	+1.8
2,070,560	-		MIT1002_01859	0.23	-0.1
2,070,578	+		MIT1002_01859	0.24	+0.1
2,070,625	-		MIT1002_01859	0.26	-0.2
2,070,647	-		MIT1002_01859	0.27	-0.7
2,070,657	-		MIT1002_01859	0.28	-0.0
2,070,672	-		MIT1002_01859	0.28	-0.4
2,070,802	+		MIT1002_01859	0.34	-0.0
2,070,810	-		MIT1002_01859	0.34	-0.6
2,070,812	+		MIT1002_01859	0.34	+0.9
2,070,820	-		MIT1002_01859	0.34	+0.9
2,070,827	+		MIT1002_01859	0.35	+0.9
2,070,845	-		MIT1002_01859	0.35	+0.9
2,070,867	+		MIT1002_01859	0.36	-0.9
2,070,867	+		MIT1002_01859	0.36	+1.4
2,070,875	-		MIT1002_01859	0.37	+1.7
2,070,875	-		MIT1002_01859	0.37	-2.3
2,071,056	+		MIT1002_01859	0.44	-0.7
2,071,064	-		MIT1002_01859	0.45	+0.5
2,071,066	+		MIT1002_01859	0.45	+1.2
2,071,076	-		MIT1002_01859	0.45	-0.4
2,071,144	+		MIT1002_01859	0.48	-1.1
2,071,144	+		MIT1002_01859	0.48	+1.4
2,071,151	-		MIT1002_01859	0.48	-0.7
2,071,152	-		MIT1002_01859	0.48	-0.0
2,071,152	-		MIT1002_01859	0.48	+1.3
2,071,152	-		MIT1002_01859	0.48	+2.2
2,071,152	-		MIT1002_01859	0.48	+0.3
2,071,181	+		MIT1002_01859	0.49	+1.2
2,071,182	+		MIT1002_01859	0.49	+0.9
2,071,205	-		MIT1002_01859	0.50	-0.1
2,071,216	+		MIT1002_01859	0.51	-1.4
2,071,228	+		MIT1002_01859	0.51	+0.7
2,071,236	-		MIT1002_01859	0.52	+0.6
2,071,236	-		MIT1002_01859	0.52	-2.1
2,071,286	-		MIT1002_01859	0.54	-1.9
2,071,325	+		MIT1002_01859	0.55	+0.6
2,071,406	-		MIT1002_01859	0.59	+0.9
2,071,451	+		MIT1002_01859	0.61	-1.9
2,071,451	+		MIT1002_01859	0.61	-2.7
2,071,456	+		MIT1002_01859	0.61	+1.7
2,071,459	-		MIT1002_01859	0.61	+1.1
2,071,513	+		MIT1002_01859	0.63	+2.2
2,071,576	+		MIT1002_01859	0.66	+1.0
2,071,584	-		MIT1002_01859	0.66	-0.1
2,071,602	+		MIT1002_01859	0.67	+1.2
2,071,610	-		MIT1002_01859	0.67	+1.2
2,071,639	+		MIT1002_01859	0.69	-0.1
2,071,675	+		MIT1002_01859	0.70	+0.3
2,071,717	+		MIT1002_01859	0.72	-0.9
2,071,725	+		MIT1002_01859	0.72	+0.6
2,071,725	-		MIT1002_01859	0.72	+0.7
2,071,733	-		MIT1002_01859	0.72	+1.2
2,071,744	-		MIT1002_01859	0.73	+0.6
2,071,750	-		MIT1002_01859	0.73	+0.5
2,071,758	+		MIT1002_01859	0.73	+0.7
2,071,759	-		MIT1002_01859	0.74	+0.4
2,071,796	-		MIT1002_01859	0.75	-0.9
2,071,808	-		MIT1002_01859	0.76	-0.2
2,071,816	+		MIT1002_01859	0.76	-0.1
2,071,825	+		MIT1002_01859	0.76	+0.5
2,071,825	+		MIT1002_01859	0.76	+0.5
2,071,833	-		MIT1002_01859	0.77	-0.5
2,071,833	-		MIT1002_01859	0.77	+0.9
2,071,833	-		MIT1002_01859	0.77	-0.6
2,071,886	-		MIT1002_01859	0.79	+1.3
2,071,937	+		MIT1002_01859	0.81	+0.8
2,071,949	+		MIT1002_01859	0.81	-0.6
2,071,957	-		MIT1002_01859	0.82	-1.0
2,071,957	-		MIT1002_01859	0.82	+2.1
2,071,971	-		MIT1002_01859	0.82	-1.5
2,072,019	+		MIT1002_01859	0.84	-2.0
2,072,042	-		MIT1002_01859	0.85	+0.2
2,072,196	-				+1.3
2,072,216	-				-2.4
2,072,238	+				+0.8
2,072,359	-				-3.3
2,072,410	+				+0.9
2,072,420	+				-1.3
2,072,426	-				+0.4
2,072,532	-				-2.3
2,072,542	+				-2.1
2,072,649	+		MIT1002_01860	0.12	+0.4
2,072,689	+		MIT1002_01860	0.17	+0.2
2,072,689	+		MIT1002_01860	0.17	+0.5
2,072,689	+		MIT1002_01860	0.17	+0.1
2,072,697	-		MIT1002_01860	0.18	-0.7
2,072,697	-		MIT1002_01860	0.18	-3.1
2,072,697	-		MIT1002_01860	0.18	-0.4
2,072,812	-		MIT1002_01860	0.30	-2.7
2,072,851	-		MIT1002_01860	0.35	+0.0
2,072,898	+		MIT1002_01860	0.40	-0.8
2,072,906	+		MIT1002_01860	0.41	+0.9
2,072,940	+		MIT1002_01860	0.45	-3.1
2,072,948	-		MIT1002_01860	0.46	+0.9
2,073,055	-		MIT1002_01860	0.57	-3.4
2,073,061	+		MIT1002_01860	0.58	+1.1
2,073,070	+		MIT1002_01860	0.59	+0.4
2,073,080	+		MIT1002_01860	0.60	+1.1
2,073,088	-		MIT1002_01860	0.61	-0.3
2,073,088	-		MIT1002_01860	0.61	-0.5
2,073,090	+		MIT1002_01860	0.61	-0.5
2,073,090	+		MIT1002_01860	0.61	-0.5
2,073,204	+		MIT1002_01860	0.74	-1.1
2,073,235	-		MIT1002_01860	0.77	+0.1
2,073,235	-		MIT1002_01860	0.77	+0.0
2,073,235	-		MIT1002_01860	0.77	+0.6
2,073,235	-		MIT1002_01860	0.77	+0.3
2,073,260	-		MIT1002_01860	0.80	-1.9
2,073,266	-		MIT1002_01860	0.81	-2.5
2,073,270	-		MIT1002_01860	0.81	-2.6
2,073,270	-		MIT1002_01860	0.81	-0.1
2,073,270	-		MIT1002_01860	0.81	-0.6
2,073,270	-		MIT1002_01860	0.81	+0.1
2,073,290	-		MIT1002_01860	0.83	+0.6
2,073,290	-		MIT1002_01860	0.83	-2.1