Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01796

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
1,998,502	-				-1.1
1,998,516	+				-2.2
1,998,524	-				+0.9
1,998,546	+				+0.2
1,998,554	-				-0.3
1,998,559	-				+1.5
1,998,813	-		MIT1002_01795	0.16	-2.5
1,998,813	-		MIT1002_01795	0.16	-0.6
1,998,819	-		MIT1002_01795	0.17	+2.0
1,998,832	-		MIT1002_01795	0.19	-2.4
1,998,888	-		MIT1002_01795	0.26	-2.5
1,998,895	-		MIT1002_01795	0.27	-2.1
1,998,949	-		MIT1002_01795	0.34	-0.6
1,998,960	-		MIT1002_01795	0.36	-0.9
1,998,989	-		MIT1002_01795	0.40	+2.5
1,999,018	-		MIT1002_01795	0.44	-1.1
1,999,118	-		MIT1002_01795	0.57	+0.3
1,999,264	-		MIT1002_01795	0.77	+0.3
1,999,341	-		MIT1002_01795	0.87	-2.0
1,999,367	-				-1.1
1,999,484	+				-1.8
1,999,499	+				+2.4
1,999,599	+		MIT1002_01796	0.14	+1.4
1,999,664	-		MIT1002_01796	0.22	+0.8
1,999,809	-		MIT1002_01796	0.40	-3.7
1,999,850	-		MIT1002_01796	0.45	+3.9
1,999,855	-		MIT1002_01796	0.45	+0.7
1,999,859	-		MIT1002_01796	0.46	-2.1
1,999,923	-		MIT1002_01796	0.54	-0.1
1,999,961	-		MIT1002_01796	0.58	+1.1
1,999,969	+		MIT1002_01796	0.59	-1.5
1,999,969	+		MIT1002_01796	0.59	+0.4
2,000,021	+		MIT1002_01796	0.66	+1.0
2,000,021	+		MIT1002_01796	0.66	-0.3
2,000,029	-		MIT1002_01796	0.67	-1.1
2,000,029	-		MIT1002_01796	0.67	-0.7
2,000,040	-		MIT1002_01796	0.68	-1.4
2,000,214	-		MIT1002_01796	0.90	+1.4
2,000,217	+				-0.8
2,000,237	-				-1.1
2,000,238	-				-1.6
2,000,248	+				+2.9
2,000,253	+				+0.2
2,000,253	+				-0.1
2,000,256	-				-0.7
2,000,272	+				+0.2
2,000,302	+				-0.5
2,000,326	+				-0.2
2,000,491	+				+1.1
2,000,565	+		MIT1002_01797	0.18	+0.8
2,000,614	-		MIT1002_01797	0.24	-3.6
2,000,625	+		MIT1002_01797	0.26	-3.1
2,000,666	-		MIT1002_01797	0.30	+0.2
2,000,805	+		MIT1002_01797	0.47	+0.1
2,000,815	+		MIT1002_01797	0.48	-0.4
2,000,815	+		MIT1002_01797	0.48	+1.5
2,000,823	-		MIT1002_01797	0.49	+0.9
2,000,823	-		MIT1002_01797	0.49	-1.3
2,000,870	+		MIT1002_01797	0.55	+0.5
2,000,872	+		MIT1002_01797	0.55	+0.7
2,001,006	-		MIT1002_01797	0.71	-0.1
2,001,030	+		MIT1002_01797	0.74	+0.1
2,001,054	+		MIT1002_01797	0.77	-0.4
2,001,076	-		MIT1002_01797	0.80	-0.1
2,001,076	-		MIT1002_01797	0.80	+0.6
2,001,149	+		MIT1002_01797	0.89	-4.4
2,001,170	-				+0.5
2,001,204	-				+1.1
2,001,277	-				-3.0