Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01387

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01386 and MIT1002_01387 are separated by 178 nucleotidesMIT1002_01387 and MIT1002_01388 are separated by 180 nucleotides MIT1002_01386: MIT1002_01386 - Vitamin B12 import ATP-binding protein BtuD, at 1,536,960 to 1,537,913 _01386 MIT1002_01387: MIT1002_01387 - Phospho-2-dehydro-3-deoxyheptonate aldolase, at 1,538,092 to 1,539,435 _01387 MIT1002_01388: MIT1002_01388 - Sensor protein SrrB, at 1,539,616 to 1,540,614 _01388 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1537.111 kb on + strand, within MIT1002_01386at 1537.138 kb on - strand, within MIT1002_01386at 1537.155 kb on + strand, within MIT1002_01386at 1537.155 kb on - strand, within MIT1002_01386at 1537.163 kb on - strand, within MIT1002_01386at 1537.163 kb on - strand, within MIT1002_01386at 1537.247 kb on + strand, within MIT1002_01386at 1537.302 kb on + strand, within MIT1002_01386at 1537.302 kb on + strand, within MIT1002_01386at 1537.302 kb on + strand, within MIT1002_01386at 1537.302 kb on + strand, within MIT1002_01386at 1537.302 kb on + strand, within MIT1002_01386at 1537.310 kb on - strand, within MIT1002_01386at 1537.325 kb on + strand, within MIT1002_01386at 1537.325 kb on + strand, within MIT1002_01386at 1537.383 kb on - strand, within MIT1002_01386at 1537.449 kb on - strand, within MIT1002_01386at 1537.458 kb on - strand, within MIT1002_01386at 1537.466 kb on - strand, within MIT1002_01386at 1537.486 kb on + strand, within MIT1002_01386at 1537.486 kb on + strand, within MIT1002_01386at 1537.494 kb on - strand, within MIT1002_01386at 1537.494 kb on - strand, within MIT1002_01386at 1537.587 kb on + strand, within MIT1002_01386at 1537.606 kb on + strand, within MIT1002_01386at 1537.615 kb on - strand, within MIT1002_01386at 1537.662 kb on - strand, within MIT1002_01386at 1537.664 kb on + strand, within MIT1002_01386at 1537.753 kb on + strand, within MIT1002_01386at 1537.966 kb on - strandat 1537.993 kb on + strandat 1538.003 kb on - strandat 1538.081 kb on + strandat 1538.104 kb on + strandat 1538.240 kb on - strand, within MIT1002_01387at 1538.262 kb on + strand, within MIT1002_01387at 1538.263 kb on + strand, within MIT1002_01387at 1538.263 kb on + strand, within MIT1002_01387at 1538.294 kb on + strand, within MIT1002_01387at 1538.302 kb on - strand, within MIT1002_01387at 1538.347 kb on - strand, within MIT1002_01387at 1538.368 kb on + strand, within MIT1002_01387at 1538.376 kb on - strand, within MIT1002_01387at 1538.483 kb on + strand, within MIT1002_01387at 1538.544 kb on - strand, within MIT1002_01387at 1538.544 kb on - strand, within MIT1002_01387at 1538.558 kb on - strand, within MIT1002_01387at 1538.694 kb on + strand, within MIT1002_01387at 1538.702 kb on - strand, within MIT1002_01387at 1538.751 kb on + strand, within MIT1002_01387at 1538.756 kb on + strand, within MIT1002_01387at 1538.756 kb on + strand, within MIT1002_01387at 1538.756 kb on + strand, within MIT1002_01387at 1538.756 kb on + strand, within MIT1002_01387at 1538.756 kb on + strand, within MIT1002_01387at 1538.764 kb on - strand, within MIT1002_01387at 1538.766 kb on + strand, within MIT1002_01387at 1538.772 kb on - strand, within MIT1002_01387at 1538.773 kb on + strand, within MIT1002_01387at 1538.774 kb on - strand, within MIT1002_01387at 1538.834 kb on + strand, within MIT1002_01387at 1538.834 kb on + strand, within MIT1002_01387at 1538.842 kb on - strand, within MIT1002_01387at 1538.842 kb on - strand, within MIT1002_01387at 1538.842 kb on - strand, within MIT1002_01387at 1538.862 kb on - strand, within MIT1002_01387at 1538.862 kb on - strand, within MIT1002_01387at 1538.882 kb on + strand, within MIT1002_01387at 1539.033 kb on - strand, within MIT1002_01387at 1539.102 kb on + strand, within MIT1002_01387at 1539.127 kb on + strand, within MIT1002_01387at 1539.134 kb on + strand, within MIT1002_01387at 1539.142 kb on - strand, within MIT1002_01387at 1539.142 kb on - strand, within MIT1002_01387at 1539.142 kb on - strand, within MIT1002_01387at 1539.230 kb on - strand, within MIT1002_01387at 1539.290 kb on + strand, within MIT1002_01387at 1539.300 kb on + strand, within MIT1002_01387at 1539.478 kb on + strandat 1539.587 kb on - strandat 1539.614 kb on - strandat 1539.614 kb on - strandat 1539.667 kb on + strandat 1539.667 kb on + strandat 1539.677 kb on + strandat 1539.677 kb on + strandat 1539.677 kb on + strandat 1539.677 kb on + strandat 1539.685 kb on - strandat 1539.685 kb on - strandat 1539.685 kb on - strandat 1539.685 kb on - strandat 1539.703 kb on - strandat 1539.864 kb on - strand, within MIT1002_01388at 1539.941 kb on + strand, within MIT1002_01388at 1539.944 kb on + strand, within MIT1002_01388at 1540.094 kb on - strand, within MIT1002_01388at 1540.094 kb on - strand, within MIT1002_01388at 1540.094 kb on - strand, within MIT1002_01388at 1540.226 kb on - strand, within MIT1002_01388at 1540.275 kb on + strand, within MIT1002_01388at 1540.275 kb on + strand, within MIT1002_01388at 1540.277 kb on + strand, within MIT1002_01388at 1540.277 kb on + strand, within MIT1002_01388at 1540.277 kb on - strand, within MIT1002_01388at 1540.283 kb on - strand, within MIT1002_01388at 1540.283 kb on - strand, within MIT1002_01388at 1540.283 kb on - strand, within MIT1002_01388at 1540.283 kb on - strand, within MIT1002_01388at 1540.285 kb on - strand, within MIT1002_01388at 1540.285 kb on - strand, within MIT1002_01388at 1540.285 kb on - strand, within MIT1002_01388at 1540.285 kb on - strand, within MIT1002_01388at 1540.317 kb on - strand, within MIT1002_01388at 1540.422 kb on - strand, within MIT1002_01388at 1540.422 kb on - strand, within MIT1002_01388at 1540.427 kb on + strand, within MIT1002_01388at 1540.427 kb on + strand, within MIT1002_01388

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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1,537,111 + MIT1002_01386 0.16 +0.1
1,537,138 - MIT1002_01386 0.19 +0.5
1,537,155 + MIT1002_01386 0.20 -0.3
1,537,155 - MIT1002_01386 0.20 -2.0
1,537,163 - MIT1002_01386 0.21 +1.7
1,537,163 - MIT1002_01386 0.21 -0.3
1,537,247 + MIT1002_01386 0.30 -2.1
1,537,302 + MIT1002_01386 0.36 -0.8
1,537,302 + MIT1002_01386 0.36 -0.1
1,537,302 + MIT1002_01386 0.36 +0.9
1,537,302 + MIT1002_01386 0.36 -0.8
1,537,302 + MIT1002_01386 0.36 +3.0
1,537,310 - MIT1002_01386 0.37 -0.3
1,537,325 + MIT1002_01386 0.38 +0.3
1,537,325 + MIT1002_01386 0.38 +1.1
1,537,383 - MIT1002_01386 0.44 -2.0
1,537,449 - MIT1002_01386 0.51 -0.2
1,537,458 - MIT1002_01386 0.52 -3.1
1,537,466 - MIT1002_01386 0.53 -0.8
1,537,486 + MIT1002_01386 0.55 +0.6
1,537,486 + MIT1002_01386 0.55 +0.1
1,537,494 - MIT1002_01386 0.56 -0.6
1,537,494 - MIT1002_01386 0.56 +0.1
1,537,587 + MIT1002_01386 0.66 -0.5
1,537,606 + MIT1002_01386 0.68 +1.6
1,537,615 - MIT1002_01386 0.69 +2.4
1,537,662 - MIT1002_01386 0.74 +1.1
1,537,664 + MIT1002_01386 0.74 +0.4
1,537,753 + MIT1002_01386 0.83 -0.8
1,537,966 - -0.9
1,537,993 + -2.8
1,538,003 - -4.5
1,538,081 + +1.4
1,538,104 + +0.6
1,538,240 - MIT1002_01387 0.11 +0.6
1,538,262 + MIT1002_01387 0.13 +1.1
1,538,263 + MIT1002_01387 0.13 -0.6
1,538,263 + MIT1002_01387 0.13 +0.2
1,538,294 + MIT1002_01387 0.15 +1.0
1,538,302 - MIT1002_01387 0.16 +1.0
1,538,347 - MIT1002_01387 0.19 -0.3
1,538,368 + MIT1002_01387 0.21 -0.6
1,538,376 - MIT1002_01387 0.21 -3.5
1,538,483 + MIT1002_01387 0.29 -2.6
1,538,544 - MIT1002_01387 0.34 +1.3
1,538,544 - MIT1002_01387 0.34 -0.4
1,538,558 - MIT1002_01387 0.35 -0.5
1,538,694 + MIT1002_01387 0.45 +1.1
1,538,702 - MIT1002_01387 0.45 -2.9
1,538,751 + MIT1002_01387 0.49 -1.5
1,538,756 + MIT1002_01387 0.49 -1.0
1,538,756 + MIT1002_01387 0.49 +1.5
1,538,756 + MIT1002_01387 0.49 +0.1
1,538,756 + MIT1002_01387 0.49 -3.2
1,538,756 + MIT1002_01387 0.49 -2.5
1,538,764 - MIT1002_01387 0.50 -0.9
1,538,766 + MIT1002_01387 0.50 +2.1
1,538,772 - MIT1002_01387 0.51 -2.6
1,538,773 + MIT1002_01387 0.51 -1.5
1,538,774 - MIT1002_01387 0.51 -0.4
1,538,834 + MIT1002_01387 0.55 -4.6
1,538,834 + MIT1002_01387 0.55 +0.8
1,538,842 - MIT1002_01387 0.56 -1.2
1,538,842 - MIT1002_01387 0.56 -0.0
1,538,842 - MIT1002_01387 0.56 -1.2
1,538,862 - MIT1002_01387 0.57 +1.9
1,538,862 - MIT1002_01387 0.57 +0.7
1,538,882 + MIT1002_01387 0.59 -2.5
1,539,033 - MIT1002_01387 0.70 -0.0
1,539,102 + MIT1002_01387 0.75 -1.8
1,539,127 + MIT1002_01387 0.77 +0.1
1,539,134 + MIT1002_01387 0.78 -1.2
1,539,142 - MIT1002_01387 0.78 -2.6
1,539,142 - MIT1002_01387 0.78 -1.8
1,539,142 - MIT1002_01387 0.78 -1.8
1,539,230 - MIT1002_01387 0.85 -0.7
1,539,290 + MIT1002_01387 0.89 +0.3
1,539,300 + MIT1002_01387 0.90 -0.3
1,539,478 + -0.3
1,539,587 - +0.5
1,539,614 - +0.1
1,539,614 - -1.2
1,539,667 + -2.6
1,539,667 + -0.4
1,539,677 + -3.0
1,539,677 + -0.8
1,539,677 + -0.3
1,539,677 + +0.8
1,539,685 - +0.8
1,539,685 - -0.4
1,539,685 - -2.4
1,539,685 - +1.0
1,539,703 - -0.6
1,539,864 - MIT1002_01388 0.25 +0.0
1,539,941 + MIT1002_01388 0.33 -0.3
1,539,944 + MIT1002_01388 0.33 -0.2
1,540,094 - MIT1002_01388 0.48 +3.3
1,540,094 - MIT1002_01388 0.48 -0.6
1,540,094 - MIT1002_01388 0.48 +0.8
1,540,226 - MIT1002_01388 0.61 +1.1
1,540,275 + MIT1002_01388 0.66 +1.2
1,540,275 + MIT1002_01388 0.66 -1.5
1,540,277 + MIT1002_01388 0.66 -0.4
1,540,277 + MIT1002_01388 0.66 -1.6
1,540,277 - MIT1002_01388 0.66 -1.5
1,540,283 - MIT1002_01388 0.67 +0.5
1,540,283 - MIT1002_01388 0.67 +1.6
1,540,283 - MIT1002_01388 0.67 +1.7
1,540,283 - MIT1002_01388 0.67 -0.9
1,540,285 - MIT1002_01388 0.67 -0.0
1,540,285 - MIT1002_01388 0.67 +1.5
1,540,285 - MIT1002_01388 0.67 +0.3
1,540,285 - MIT1002_01388 0.67 -0.3
1,540,317 - MIT1002_01388 0.70 -3.0
1,540,422 - MIT1002_01388 0.81 +1.3
1,540,422 - MIT1002_01388 0.81 -0.0
1,540,427 + MIT1002_01388 0.81 +1.8
1,540,427 + MIT1002_01388 0.81 -0.4

Or see this region's nucleotide sequence