Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01280

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
1,411,409	-		MIT1002_01279	0.58	+0.8
1,411,458	+		MIT1002_01279	0.61	-0.9
1,411,460	+		MIT1002_01279	0.61	+0.1
1,411,468	-		MIT1002_01279	0.61	+0.9
1,411,584	+		MIT1002_01279	0.68	-2.8
1,411,681	-		MIT1002_01279	0.73	-1.5
1,411,681	-		MIT1002_01279	0.73	+0.2
1,411,681	-		MIT1002_01279	0.73	-1.5
1,411,727	+		MIT1002_01279	0.75	-0.4
1,411,756	-		MIT1002_01279	0.77	-0.9
1,411,761	-		MIT1002_01279	0.77	+0.4
1,411,842	-		MIT1002_01279	0.81	-0.1
1,411,931	+		MIT1002_01279	0.86	+0.4
1,412,007	-				-0.8
1,412,034	+				+0.2
1,412,048	+				-0.2
1,412,048	+				-1.5
1,412,048	+				-2.0
1,412,056	-				+0.0
1,412,056	-				-1.1
1,412,056	-				-0.8
1,412,138	+				+0.1
1,412,146	-				-1.6
1,412,170	-				-0.7
1,412,229	-				-3.1
1,412,245	+				+1.5
1,412,245	+				+0.1
1,412,253	-				+1.0
1,412,253	-				-1.1
1,412,253	-				+0.5
1,412,253	-				-3.1
1,412,253	-				+1.2
1,412,255	+				-0.3
1,412,279	-				-0.9
1,412,312	+				-0.1
1,412,312	-				-2.6
1,412,320	-				+1.7
1,412,320	-				+0.6
1,412,464	+				-2.1
1,412,496	+				-0.6
1,412,504	-				+0.0
1,412,553	+				-1.1
1,412,553	+				-1.7
1,412,553	+				-0.1
1,412,561	-				+1.9
1,412,561	-				-0.4
1,412,561	-				-0.3
1,412,599	+		MIT1002_01280	0.11	-1.3
1,412,635	+		MIT1002_01280	0.13	-0.3
1,412,643	-		MIT1002_01280	0.14	-1.4
1,412,719	+		MIT1002_01280	0.18	-3.6
1,412,727	-		MIT1002_01280	0.19	-2.6
1,412,727	-		MIT1002_01280	0.19	+0.7
1,412,740	+		MIT1002_01280	0.19	+0.5
1,412,748	-		MIT1002_01280	0.20	+0.7
1,412,748	-		MIT1002_01280	0.20	-0.5
1,412,748	-		MIT1002_01280	0.20	-2.6
1,412,772	+		MIT1002_01280	0.21	+0.3
1,412,780	-		MIT1002_01280	0.21	+2.5
1,412,829	+		MIT1002_01280	0.24	-0.3
1,412,845	+		MIT1002_01280	0.25	-2.6
1,412,848	+		MIT1002_01280	0.25	-1.8
1,412,853	+		MIT1002_01280	0.25	+1.5
1,412,856	-		MIT1002_01280	0.26	-0.7
1,412,883	-		MIT1002_01280	0.27	-0.9
1,412,899	+		MIT1002_01280	0.28	+2.1
1,412,912	+		MIT1002_01280	0.29	-1.7
1,412,912	+		MIT1002_01280	0.29	-1.8
1,412,912	+		MIT1002_01280	0.29	-1.4
1,412,912	+		MIT1002_01280	0.29	-2.0
1,412,912	+		MIT1002_01280	0.29	+0.1
1,412,912	+		MIT1002_01280	0.29	-0.6
1,412,919	+		MIT1002_01280	0.29	-0.3
1,412,919	+		MIT1002_01280	0.29	-2.8
1,412,920	-		MIT1002_01280	0.29	-1.1
1,412,920	-		MIT1002_01280	0.29	+1.3
1,412,920	-		MIT1002_01280	0.29	+0.3
1,412,920	-		MIT1002_01280	0.29	-2.3
1,412,920	-		MIT1002_01280	0.29	+0.7
1,412,920	-		MIT1002_01280	0.29	-0.2
1,412,920	-		MIT1002_01280	0.29	+1.0
1,412,927	-		MIT1002_01280	0.29	-0.3
1,412,927	-		MIT1002_01280	0.29	-1.3
1,412,927	-		MIT1002_01280	0.29	-3.6
1,412,943	+		MIT1002_01280	0.30	+0.3
1,412,951	-		MIT1002_01280	0.31	-2.7
1,412,953	+		MIT1002_01280	0.31	+2.0
1,413,017	+		MIT1002_01280	0.34	-3.9
1,413,017	+		MIT1002_01280	0.34	-2.2
1,413,026	+		MIT1002_01280	0.35	-0.9
1,413,088	-		MIT1002_01280	0.38	-0.2
1,413,157	-		MIT1002_01280	0.42	+0.1
1,413,174	-		MIT1002_01280	0.43	-1.3
1,413,189	+		MIT1002_01280	0.44	-1.3
1,413,234	+		MIT1002_01280	0.46	+0.7
1,413,242	-		MIT1002_01280	0.47	-0.6
1,413,249	+		MIT1002_01280	0.47	+1.0
1,413,249	+		MIT1002_01280	0.47	-2.0
1,413,249	+		MIT1002_01280	0.47	-1.4
1,413,257	-		MIT1002_01280	0.48	+0.0
1,413,257	-		MIT1002_01280	0.48	-0.3
1,413,257	-		MIT1002_01280	0.48	-0.3
1,413,306	+		MIT1002_01280	0.50	-0.4
1,413,331	+		MIT1002_01280	0.52	+0.6
1,413,346	-		MIT1002_01280	0.52	-2.5
1,413,425	-		MIT1002_01280	0.57	+0.0
1,413,454	+		MIT1002_01280	0.58	-2.6
1,413,511	-		MIT1002_01280	0.62	-1.3
1,413,697	+		MIT1002_01280	0.72	+1.4
1,413,736	+		MIT1002_01280	0.74	-1.5
1,413,742	-		MIT1002_01280	0.74	-0.6
1,413,744	-		MIT1002_01280	0.74	+1.6
1,413,752	-		MIT1002_01280	0.75	+0.5
1,413,763	-		MIT1002_01280	0.75	-1.1
1,413,780	+		MIT1002_01280	0.76	+0.5
1,413,846	-		MIT1002_01280	0.80	+1.7
1,413,891	+		MIT1002_01280	0.82	+0.3
1,413,942	+		MIT1002_01280	0.85	+1.5
1,414,010	+		MIT1002_01280	0.89	-1.3
1,414,021	+		MIT1002_01280	0.90	-4.2
1,414,029	-				-2.1
1,414,040	+				+0.2
1,414,069	+				-0.5
1,414,083	+				-0.1
1,414,093	+				+1.2
1,414,139	+				-0.6
1,414,160	-				+0.0
1,414,234	-				-1.1
1,414,313	-				+1.3
1,414,358	+				+1.2
1,414,378	-				-0.6
1,414,390	+				-1.0
1,414,488	+		MIT1002_01281	0.13	-2.1
1,414,525	+		MIT1002_01281	0.15	-1.1
1,414,528	-		MIT1002_01281	0.15	-2.0
1,414,576	-		MIT1002_01281	0.18	-1.6
1,414,580	+		MIT1002_01281	0.18	-2.9
1,414,588	-		MIT1002_01281	0.18	+1.9
1,414,626	-		MIT1002_01281	0.20	-2.6
1,414,626	-		MIT1002_01281	0.20	+1.3
1,414,656	-		MIT1002_01281	0.22	+0.3
1,414,724	-		MIT1002_01281	0.25	-0.7
1,414,746	-		MIT1002_01281	0.26	+4.0
1,414,805	+		MIT1002_01281	0.29	-1.2
1,414,982	-		MIT1002_01281	0.37	-2.1
1,414,982	-		MIT1002_01281	0.37	-0.5
1,415,032	+		MIT1002_01281	0.40	+0.0
1,415,051	-		MIT1002_01281	0.41	-0.8
1,415,051	-		MIT1002_01281	0.41	+1.3
1,415,069	+		MIT1002_01281	0.42	-2.2
1,415,069	+		MIT1002_01281	0.42	-1.3
1,415,069	+		MIT1002_01281	0.42	-2.2
1,415,069	+		MIT1002_01281	0.42	+0.2
1,415,069	+		MIT1002_01281	0.42	+0.6
1,415,077	-		MIT1002_01281	0.42	-1.1
1,415,077	-		MIT1002_01281	0.42	-0.6
1,415,077	-		MIT1002_01281	0.42	+0.2
1,415,077	-		MIT1002_01281	0.42	-1.6
1,415,077	-		MIT1002_01281	0.42	-2.0
1,415,077	-		MIT1002_01281	0.42	+0.5
1,415,077	-		MIT1002_01281	0.42	-1.5
1,415,135	-		MIT1002_01281	0.45	-2.0
1,415,149	-		MIT1002_01281	0.45	+0.4
1,415,149	-		MIT1002_01281	0.45	-2.7
1,415,158	-		MIT1002_01281	0.46	-2.2
1,415,161	+		MIT1002_01281	0.46	+0.5
1,415,162	+		MIT1002_01281	0.46	-1.1
1,415,170	+		MIT1002_01281	0.46	+2.4
1,415,171	-		MIT1002_01281	0.47	-1.1
1,415,203	-		MIT1002_01281	0.48	-1.1