Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00959

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
1,064,030	-		MIT1002_00957	0.58	-0.1
1,064,030	-		MIT1002_00957	0.58	+1.1
1,064,111	+		MIT1002_00957	0.65	+2.5
1,064,163	-		MIT1002_00957	0.69	+1.7
1,064,174	+		MIT1002_00957	0.70	-0.5
1,064,180	-		MIT1002_00957	0.70	-0.7
1,064,232	+		MIT1002_00957	0.75	+0.0
1,064,265	+		MIT1002_00957	0.78	-0.3
1,064,283	+		MIT1002_00957	0.79	-0.3
1,064,340	+		MIT1002_00957	0.84	-0.7
1,064,343	+		MIT1002_00957	0.84	+1.2
1,064,343	+		MIT1002_00957	0.84	-0.0
1,064,343	+		MIT1002_00957	0.84	+1.1
1,064,351	-		MIT1002_00957	0.85	+0.6
1,064,351	-		MIT1002_00957	0.85	-0.0
1,064,351	-		MIT1002_00957	0.85	-2.2
1,064,365	+		MIT1002_00957	0.86	+0.7
1,064,373	-		MIT1002_00957	0.87	-0.3
1,064,407	-		MIT1002_00957	0.89	-0.3
1,064,410	+		MIT1002_00957	0.90	-0.1
1,064,410	+		MIT1002_00957	0.90	-0.5
1,064,418	-				-1.4
1,064,418	-				+1.1
1,064,418	-				+0.1
1,064,438	-				-3.0
1,064,438	-				+1.1
1,064,438	-				+0.5
1,064,579	+				-0.6
1,064,651	-				+1.1
1,064,675	+				-0.4
1,064,682	+				-0.5
1,064,735	+		MIT1002_00958	0.20	+0.1
1,064,748	-		MIT1002_00958	0.25	+0.9
1,064,797	+		MIT1002_00958	0.40	-0.3
1,064,945	+		MIT1002_00958	0.86	-0.5
1,065,017	+				+2.3
1,065,034	+				-2.0
1,065,034	+				+1.1
1,065,034	+				+1.1
1,065,034	+				-1.0
1,065,042	-				+0.9
1,065,042	-				+1.8
1,065,057	-				-3.2
1,065,119	+				-1.7
1,065,125	+				-1.6
1,065,127	-				-2.7
1,065,140	+				-0.2
1,065,171	-				+0.8
1,065,228	+				+0.5
1,065,236	-				+0.5
1,065,290	+		MIT1002_00959	0.12	+1.1
1,065,328	-		MIT1002_00959	0.13	+1.1
1,065,340	-		MIT1002_00959	0.14	+1.4
1,065,438	+		MIT1002_00959	0.18	-1.1
1,065,468	-		MIT1002_00959	0.19	+1.2
1,065,505	+		MIT1002_00959	0.20	-0.4
1,065,582	+		MIT1002_00959	0.24	+0.1
1,065,592	+		MIT1002_00959	0.24	+0.1
1,065,662	+		MIT1002_00959	0.27	-2.0
1,065,704	+		MIT1002_00959	0.29	-1.8
1,065,713	-		MIT1002_00959	0.29	+1.2
1,065,728	+		MIT1002_00959	0.30	-0.8
1,065,781	-		MIT1002_00959	0.32	+0.5
1,065,843	-		MIT1002_00959	0.34	+0.1
1,065,882	+		MIT1002_00959	0.36	-0.8
1,065,900	-		MIT1002_00959	0.36	+1.0
1,065,912	-		MIT1002_00959	0.37	+0.4
1,066,026	+		MIT1002_00959	0.42	+0.1
1,066,031	+		MIT1002_00959	0.42	+1.1
1,066,034	-		MIT1002_00959	0.42	+1.4
1,066,071	+		MIT1002_00959	0.43	-1.8
1,066,088	-		MIT1002_00959	0.44	+0.6
1,066,104	+		MIT1002_00959	0.45	-0.6
1,066,104	+		MIT1002_00959	0.45	+0.9
1,066,112	-		MIT1002_00959	0.45	+0.8
1,066,112	-		MIT1002_00959	0.45	-2.3
1,066,112	-		MIT1002_00959	0.45	+0.5
1,066,168	+		MIT1002_00959	0.47	+0.3
1,066,168	+		MIT1002_00959	0.47	-0.6
1,066,176	-		MIT1002_00959	0.48	-1.2
1,066,220	+		MIT1002_00959	0.49	-0.3
1,066,221	+		MIT1002_00959	0.49	+0.1
1,066,279	+		MIT1002_00959	0.52	+1.3
1,066,280	+		MIT1002_00959	0.52	-0.1
1,066,288	-		MIT1002_00959	0.52	+0.5
1,066,346	+		MIT1002_00959	0.55	+0.7
1,066,346	+		MIT1002_00959	0.55	-0.9
1,066,346	+		MIT1002_00959	0.55	-0.9
1,066,346	+		MIT1002_00959	0.55	-3.3
1,066,346	+		MIT1002_00959	0.55	+0.9
1,066,346	+		MIT1002_00959	0.55	+0.5
1,066,346	+		MIT1002_00959	0.55	+0.6
1,066,354	-		MIT1002_00959	0.55	+1.9
1,066,354	-		MIT1002_00959	0.55	+0.1
1,066,354	-		MIT1002_00959	0.55	+0.1
1,066,354	-		MIT1002_00959	0.55	+0.9
1,066,359	+		MIT1002_00959	0.55	+0.6
1,066,367	-		MIT1002_00959	0.55	-1.4
1,066,383	+		MIT1002_00959	0.56	+1.1
1,066,383	+		MIT1002_00959	0.56	-0.6
1,066,383	+		MIT1002_00959	0.56	+0.4
1,066,391	-		MIT1002_00959	0.56	+1.6
1,066,409	-		MIT1002_00959	0.57	+1.0
1,066,435	-		MIT1002_00959	0.58	-0.1
1,066,446	-		MIT1002_00959	0.59	-1.4
1,066,530	+		MIT1002_00959	0.62	+0.1
1,066,538	-		MIT1002_00959	0.62	-0.1
1,066,538	-		MIT1002_00959	0.62	-1.7
1,066,568	+		MIT1002_00959	0.64	-0.3
1,066,576	-		MIT1002_00959	0.64	+0.3
1,066,591	-		MIT1002_00959	0.64	+1.1
1,066,690	+		MIT1002_00959	0.68	+2.4
1,066,694	+		MIT1002_00959	0.69	+1.5
1,066,871	+		MIT1002_00959	0.76	-1.8
1,066,871	+		MIT1002_00959	0.76	-0.7
1,066,879	-		MIT1002_00959	0.76	-0.6
1,066,879	-		MIT1002_00959	0.76	-0.1
1,066,879	-		MIT1002_00959	0.76	-0.3
1,066,889	-		MIT1002_00959	0.77	-1.9
1,066,920	-		MIT1002_00959	0.78	+1.2
1,066,969	-		MIT1002_00959	0.80	+1.0
1,067,030	+		MIT1002_00959	0.82	-0.7
1,067,134	-		MIT1002_00959	0.86	+0.3
1,067,169	+		MIT1002_00959	0.88	+0.3
1,067,227	+				+0.2
1,067,235	-				-0.1
1,067,292	-				-0.2
1,067,315	+				-1.6
1,067,323	-				+0.1
1,067,323	-				+1.1
1,067,363	-				-0.5
1,067,386	-				+0.7
1,067,399	+				+0.4
1,067,399	+				+0.6
1,067,426	+				+0.0
1,067,441	-				+1.1
1,067,491	+				-3.3
1,067,728	-				-2.3
1,067,734	-				+1.2
1,067,830	-				-2.3