Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00925

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
1,024,792	-		MIT1002_00923	0.52	+1.2
1,024,829	-		MIT1002_00923	0.55	+1.1
1,024,873	-		MIT1002_00923	0.59	+0.8
1,024,875	-		MIT1002_00923	0.59	+0.3
1,025,033	-		MIT1002_00923	0.73	-1.5
1,025,072	+		MIT1002_00923	0.76	-1.6
1,025,078	+		MIT1002_00923	0.76	-0.1
1,025,084	+		MIT1002_00923	0.77	+0.9
1,025,100	+		MIT1002_00923	0.78	+0.8
1,025,237	-		MIT1002_00923	0.90	-2.0
1,025,240	-				-1.4
1,025,285	+				-2.0
1,025,349	-				-1.1
1,025,352	-				-1.7
1,025,365	+				-0.8
1,025,385	+				+0.9
1,025,398	-				-0.4
1,025,406	+				-2.4
1,025,420	-				+0.4
1,025,725	+				-0.7
1,025,775	+				+0.4
1,025,776	-				+2.2
1,025,786	+				+1.1
1,025,794	-				+1.5
1,025,816	+				-0.9
1,025,824	-				-1.9
1,025,863	-				+0.2
1,025,881	+				-0.1
1,025,974	+				+1.2
1,025,983	-				-2.0
1,026,172	+		MIT1002_00925	0.17	+2.0
1,026,190	-		MIT1002_00925	0.18	-1.4
1,026,191	-		MIT1002_00925	0.18	+0.8
1,026,198	-		MIT1002_00925	0.18	-1.0
1,026,205	-		MIT1002_00925	0.18	-2.8
1,026,219	-		MIT1002_00925	0.19	+0.4
1,026,273	-		MIT1002_00925	0.21	-2.0
1,026,339	-		MIT1002_00925	0.23	+1.0
1,026,351	-		MIT1002_00925	0.23	-0.2
1,026,368	+		MIT1002_00925	0.24	-3.2
1,026,429	-		MIT1002_00925	0.26	-1.0
1,026,429	-		MIT1002_00925	0.26	+0.7
1,026,434	+		MIT1002_00925	0.26	+0.6
1,026,434	+		MIT1002_00925	0.26	-0.2
1,026,442	-		MIT1002_00925	0.27	-0.2
1,026,442	-		MIT1002_00925	0.27	+0.3
1,026,442	-		MIT1002_00925	0.27	+0.4
1,026,458	+		MIT1002_00925	0.27	+1.2
1,026,498	-		MIT1002_00925	0.29	+0.5
1,026,510	-		MIT1002_00925	0.29	-0.4
1,026,729	-		MIT1002_00925	0.37	+1.6
1,026,729	-		MIT1002_00925	0.37	-0.4
1,026,756	-		MIT1002_00925	0.38	-0.1
1,026,757	-		MIT1002_00925	0.38	+1.2
1,026,757	-		MIT1002_00925	0.38	-3.1
1,026,757	-		MIT1002_00925	0.38	+0.5
1,026,757	-		MIT1002_00925	0.38	+1.4
1,026,757	-		MIT1002_00925	0.38	+0.3
1,026,757	-		MIT1002_00925	0.38	-3.2
1,026,906	+		MIT1002_00925	0.44	-2.3
1,026,906	+		MIT1002_00925	0.44	+1.6
1,026,906	+		MIT1002_00925	0.44	+0.4
1,026,906	+		MIT1002_00925	0.44	-1.9
1,026,906	+		MIT1002_00925	0.44	+1.7
1,026,914	-		MIT1002_00925	0.44	+0.7
1,026,923	+		MIT1002_00925	0.44	+2.5
1,026,923	+		MIT1002_00925	0.44	+0.3
1,026,931	-		MIT1002_00925	0.44	+1.7
1,026,931	-		MIT1002_00925	0.44	-2.2
1,026,933	+		MIT1002_00925	0.44	+0.0
1,026,973	+		MIT1002_00925	0.46	+0.6
1,026,973	+		MIT1002_00925	0.46	-3.1
1,026,983	+		MIT1002_00925	0.46	+0.5
1,026,983	+		MIT1002_00925	0.46	-1.4
1,026,983	+		MIT1002_00925	0.46	-0.8
1,026,983	+		MIT1002_00925	0.46	-1.1
1,026,991	-		MIT1002_00925	0.47	-0.3
1,026,999	-		MIT1002_00925	0.47	-2.1
1,027,051	+		MIT1002_00925	0.49	+2.4
1,027,157	+		MIT1002_00925	0.53	+0.2
1,027,195	+		MIT1002_00925	0.54	-2.2
1,027,213	+		MIT1002_00925	0.55	-0.1
1,027,214	+		MIT1002_00925	0.55	+0.0
1,027,249	+		MIT1002_00925	0.56	+0.6
1,027,249	+		MIT1002_00925	0.56	+1.1
1,027,326	-		MIT1002_00925	0.59	-0.3
1,027,349	+		MIT1002_00925	0.60	-1.7
1,027,411	+		MIT1002_00925	0.62	-1.3
1,027,465	-		MIT1002_00925	0.64	+1.4
1,027,487	-		MIT1002_00925	0.65	-0.3
1,027,493	+		MIT1002_00925	0.65	-0.3
1,027,501	-		MIT1002_00925	0.65	+1.6
1,027,511	-		MIT1002_00925	0.65	+0.2
1,027,529	+		MIT1002_00925	0.66	+2.0
1,027,584	+		MIT1002_00925	0.68	-0.0
1,027,620	+		MIT1002_00925	0.69	-4.0
1,027,628	-		MIT1002_00925	0.70	+1.2
1,027,639	+		MIT1002_00925	0.70	-2.4
1,027,693	-		MIT1002_00925	0.72	+1.0
1,027,721	+		MIT1002_00925	0.73	+0.3
1,027,749	+		MIT1002_00925	0.74	+0.8
1,027,785	-		MIT1002_00925	0.75	-0.2
1,027,798	+		MIT1002_00925	0.76	-0.9
1,027,903	-		MIT1002_00925	0.80	+1.5
1,027,916	+		MIT1002_00925	0.80	+0.1
1,027,944	+		MIT1002_00925	0.81	-0.9
1,027,978	-		MIT1002_00925	0.82	-0.1
1,027,978	-		MIT1002_00925	0.82	+0.7
1,027,993	-		MIT1002_00925	0.83	+2.2
1,028,002	+		MIT1002_00925	0.83	+0.7
1,028,010	-		MIT1002_00925	0.84	+1.6
1,028,128	+		MIT1002_00925	0.88	-1.6
1,028,136	-		MIT1002_00925	0.88	+0.3
1,028,146	-		MIT1002_00925	0.89	-0.1
1,028,306	-				-1.4
1,028,347	+				-0.5
1,028,381	+				+0.9
1,028,389	-				+2.5
1,028,389	-				-3.6
1,028,391	+				-0.3
1,028,399	-				+0.6
1,028,406	-				+1.0
1,028,434	+				+1.3
1,028,434	+				-0.7
1,028,566	+				+0.6
1,028,568	+				+0.8
1,028,578	+				+0.3
1,028,601	+				-1.4
1,028,606	-				+0.6
1,028,612	+				+1.0
1,028,622	+				+1.7
1,028,713	-		MIT1002_00926	0.21	+1.4
1,028,713	-		MIT1002_00926	0.21	-1.3
1,028,741	+		MIT1002_00926	0.24	+0.7
1,028,756	+		MIT1002_00926	0.26	-0.0
1,028,756	+		MIT1002_00926	0.26	-0.3
1,028,764	-		MIT1002_00926	0.27	+0.8
1,028,764	-		MIT1002_00926	0.27	-0.0
1,028,790	+		MIT1002_00926	0.30	-3.0
1,028,825	+		MIT1002_00926	0.35	-1.0
1,028,869	-		MIT1002_00926	0.40	-1.6
1,028,887	+		MIT1002_00926	0.42	-2.7
1,028,927	-		MIT1002_00926	0.47	+0.3
1,028,943	+		MIT1002_00926	0.49	+1.4
1,028,944	+		MIT1002_00926	0.49	-2.0
1,028,947	-		MIT1002_00926	0.50	-0.4
1,029,047	+		MIT1002_00926	0.62	-1.8
1,029,057	+		MIT1002_00926	0.63	-2.8
1,029,070	+		MIT1002_00926	0.65	-1.1
1,029,094	+		MIT1002_00926	0.68	-0.7
1,029,094	+		MIT1002_00926	0.68	-1.0
1,029,094	+		MIT1002_00926	0.68	+0.4
1,029,102	-		MIT1002_00926	0.69	-0.3
1,029,102	-		MIT1002_00926	0.69	+1.1
1,029,102	-		MIT1002_00926	0.69	+1.3
1,029,181	-		MIT1002_00926	0.79	+1.3
1,029,203	-		MIT1002_00926	0.81	-0.3
1,029,203	-		MIT1002_00926	0.81	+1.1
1,029,234	-		MIT1002_00926	0.85	-0.3
1,029,262	+		MIT1002_00926	0.89	+0.4
1,029,392	-				-1.4
1,029,392	-				-0.7
1,029,436	-				+0.9
1,029,436	-				-3.3
1,029,451	+				-1.8