Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00892 and MIT1002_00893 are separated by 375 nucleotides MIT1002_00893 and MIT1002_00894 are separated by 322 nucleotides MIT1002_00894 and MIT1002_00895 are separated by 125 nucleotides
MIT1002_00892: MIT1002_00892 - Transposase IS116/IS110/IS902 family protein, at 982,657 to 983,682
_00892
MIT1002_00893: MIT1002_00893 - IMPACT family member YigZ, at 984,058 to 984,660
_00893
MIT1002_00894: MIT1002_00894 - hypothetical protein, at 984,983 to 985,306
_00894
MIT1002_00895: MIT1002_00895 - Chemotaxis regulator BdlA, at 985,432 to 986,730
_00895
Position (kb) 984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 983.926 kb on + strand at 984.086 kb on + strand at 984.284 kb on - strand, within MIT1002_00893 at 984.317 kb on + strand, within MIT1002_00893 at 984.454 kb on + strand, within MIT1002_00893 at 984.476 kb on + strand, within MIT1002_00893 at 984.503 kb on + strand, within MIT1002_00893 at 984.503 kb on + strand, within MIT1002_00893 at 984.626 kb on + strand at 984.631 kb on + strand at 984.650 kb on + strand at 984.713 kb on - strand at 984.756 kb on + strand at 984.756 kb on + strand at 984.762 kb on + strand at 984.764 kb on - strand at 984.912 kb on - strand at 984.936 kb on - strand at 984.936 kb on - strand at 984.941 kb on + strand at 984.949 kb on - strand at 984.949 kb on - strand at 985.028 kb on + strand, within MIT1002_00894 at 985.033 kb on - strand, within MIT1002_00894 at 985.043 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.086 kb on + strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.094 kb on - strand, within MIT1002_00894 at 985.313 kb on + strand at 985.321 kb on - strand at 985.323 kb on + strand at 985.331 kb on - strand at 985.331 kb on - strand at 985.454 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1 remove 983,926 + -1.0 984,086 + +0.1 984,284 - MIT1002_00893 0.37 +0.1 984,317 + MIT1002_00893 0.43 -0.2 984,454 + MIT1002_00893 0.66 +0.3 984,476 + MIT1002_00893 0.69 -0.6 984,503 + MIT1002_00893 0.74 +0.4 984,503 + MIT1002_00893 0.74 +0.7 984,626 + +0.4 984,631 + -0.5 984,650 + +0.9 984,713 - -1.0 984,756 + -0.6 984,756 + -1.5 984,762 + -3.4 984,764 - +0.2 984,912 - +1.1 984,936 - -1.6 984,936 - +0.9 984,941 + +0.8 984,949 - -0.4 984,949 - -1.8 985,028 + MIT1002_00894 0.14 +0.2 985,033 - MIT1002_00894 0.15 -0.9 985,043 + MIT1002_00894 0.19 +0.9 985,086 + MIT1002_00894 0.32 +0.1 985,086 + MIT1002_00894 0.32 +0.7 985,086 + MIT1002_00894 0.32 -1.7 985,086 + MIT1002_00894 0.32 -0.2 985,086 + MIT1002_00894 0.32 -3.5 985,086 + MIT1002_00894 0.32 -0.5 985,086 + MIT1002_00894 0.32 -0.5 985,086 + MIT1002_00894 0.32 +1.1 985,086 + MIT1002_00894 0.32 +0.0 985,086 + MIT1002_00894 0.32 -1.1 985,086 + MIT1002_00894 0.32 -2.8 985,094 - MIT1002_00894 0.34 +3.5 985,094 - MIT1002_00894 0.34 -0.4 985,094 - MIT1002_00894 0.34 -3.2 985,094 - MIT1002_00894 0.34 +2.0 985,094 - MIT1002_00894 0.34 +0.0 985,094 - MIT1002_00894 0.34 +1.4 985,094 - MIT1002_00894 0.34 -0.2 985,094 - MIT1002_00894 0.34 +0.7 985,094 - MIT1002_00894 0.34 +0.8 985,094 - MIT1002_00894 0.34 +1.4 985,094 - MIT1002_00894 0.34 -1.6 985,094 - MIT1002_00894 0.34 -0.0 985,094 - MIT1002_00894 0.34 +0.3 985,094 - MIT1002_00894 0.34 -0.7 985,094 - MIT1002_00894 0.34 +1.4 985,094 - MIT1002_00894 0.34 -3.2 985,094 - MIT1002_00894 0.34 -0.1 985,094 - MIT1002_00894 0.34 -1.9 985,094 - MIT1002_00894 0.34 -2.8 985,313 + +0.1 985,321 - -0.3 985,323 + +1.1 985,331 - +0.6 985,331 - +0.3 985,454 + -1.6
Or see this region's nucleotide sequence