Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00587 and MIT1002_00588 are separated by 11 nucleotides MIT1002_00588 and MIT1002_00589 overlap by 4 nucleotides MIT1002_00589 and MIT1002_00590 are separated by 82 nucleotides
MIT1002_00587: MIT1002_00587 - hypothetical protein, at 634,732 to 635,598
_00587
MIT1002_00588: MIT1002_00588 - hypothetical protein, at 635,610 to 635,894
_00588
MIT1002_00589: MIT1002_00589 - hypothetical protein, at 635,891 to 636,463
_00589
MIT1002_00590: MIT1002_00590 - Type I restriction enzyme EcoKI M protein, at 636,546 to 638,126
_00590
Position (kb) 635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 634.944 kb on + strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.952 kb on - strand, within MIT1002_00587 at 634.981 kb on - strand, within MIT1002_00587 at 634.981 kb on - strand, within MIT1002_00587 at 635.086 kb on - strand, within MIT1002_00587 at 635.106 kb on - strand, within MIT1002_00587 at 635.142 kb on - strand, within MIT1002_00587 at 635.196 kb on - strand, within MIT1002_00587 at 635.208 kb on - strand, within MIT1002_00587 at 635.213 kb on - strand, within MIT1002_00587 at 635.236 kb on + strand, within MIT1002_00587 at 635.244 kb on - strand, within MIT1002_00587 at 635.302 kb on - strand, within MIT1002_00587 at 635.313 kb on + strand, within MIT1002_00587 at 635.338 kb on + strand, within MIT1002_00587 at 635.339 kb on + strand, within MIT1002_00587 at 635.350 kb on + strand, within MIT1002_00587 at 635.375 kb on + strand, within MIT1002_00587 at 635.472 kb on - strand, within MIT1002_00587 at 635.503 kb on + strand, within MIT1002_00587 at 635.548 kb on + strand at 635.556 kb on - strand at 635.565 kb on + strand at 635.585 kb on + strand at 635.585 kb on + strand at 635.601 kb on - strand at 635.641 kb on - strand, within MIT1002_00588 at 635.722 kb on + strand, within MIT1002_00588 at 635.808 kb on + strand, within MIT1002_00588 at 635.883 kb on + strand at 635.899 kb on + strand at 635.922 kb on - strand at 635.929 kb on + strand at 635.937 kb on - strand at 635.953 kb on - strand, within MIT1002_00589 at 635.966 kb on + strand, within MIT1002_00589 at 635.974 kb on - strand, within MIT1002_00589 at 636.031 kb on + strand, within MIT1002_00589 at 636.078 kb on - strand, within MIT1002_00589 at 636.172 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.233 kb on + strand, within MIT1002_00589 at 636.246 kb on - strand, within MIT1002_00589 at 636.317 kb on + strand, within MIT1002_00589 at 636.325 kb on - strand, within MIT1002_00589 at 636.332 kb on + strand, within MIT1002_00589 at 636.332 kb on + strand, within MIT1002_00589 at 636.340 kb on - strand, within MIT1002_00589 at 636.354 kb on - strand, within MIT1002_00589 at 636.378 kb on - strand, within MIT1002_00589 at 636.484 kb on + strand at 636.553 kb on + strand at 636.581 kb on - strand at 636.614 kb on - strand at 636.614 kb on - strand at 636.659 kb on + strand at 636.760 kb on - strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.971 kb on + strand, within MIT1002_00590 at 636.979 kb on - strand, within MIT1002_00590 at 636.979 kb on - strand, within MIT1002_00590 at 637.021 kb on + strand, within MIT1002_00590 at 637.029 kb on + strand, within MIT1002_00590 at 637.154 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.386 kb on + strand, within MIT1002_00590 at 637.387 kb on + strand, within MIT1002_00590 at 637.394 kb on - strand, within MIT1002_00590
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1 remove 634,944 + MIT1002_00587 0.24 -0.5 634,952 - MIT1002_00587 0.25 -1.2 634,952 - MIT1002_00587 0.25 +1.4 634,952 - MIT1002_00587 0.25 +0.3 634,981 - MIT1002_00587 0.29 +0.8 634,981 - MIT1002_00587 0.29 +0.2 635,086 - MIT1002_00587 0.41 -0.7 635,106 - MIT1002_00587 0.43 -0.5 635,142 - MIT1002_00587 0.47 +0.7 635,196 - MIT1002_00587 0.54 +1.0 635,208 - MIT1002_00587 0.55 +0.3 635,213 - MIT1002_00587 0.55 -2.5 635,236 + MIT1002_00587 0.58 -0.4 635,244 - MIT1002_00587 0.59 -0.5 635,302 - MIT1002_00587 0.66 -1.5 635,313 + MIT1002_00587 0.67 +1.0 635,338 + MIT1002_00587 0.70 -0.1 635,339 + MIT1002_00587 0.70 -1.1 635,350 + MIT1002_00587 0.71 -0.8 635,375 + MIT1002_00587 0.74 -0.3 635,472 - MIT1002_00587 0.85 -2.3 635,503 + MIT1002_00587 0.89 +1.5 635,548 + -1.3 635,556 - -0.3 635,565 + +0.4 635,585 + -2.3 635,585 + +3.4 635,601 - -0.1 635,641 - MIT1002_00588 0.11 +1.6 635,722 + MIT1002_00588 0.39 -2.9 635,808 + MIT1002_00588 0.69 +1.0 635,883 + +1.6 635,899 + +1.8 635,922 - -0.3 635,929 + -0.1 635,937 - +1.1 635,953 - MIT1002_00589 0.11 -1.2 635,966 + MIT1002_00589 0.13 -0.3 635,974 - MIT1002_00589 0.14 -1.2 636,031 + MIT1002_00589 0.24 +1.8 636,078 - MIT1002_00589 0.33 +0.1 636,172 + MIT1002_00589 0.49 -1.1 636,233 + MIT1002_00589 0.60 +0.4 636,233 + MIT1002_00589 0.60 -0.1 636,233 + MIT1002_00589 0.60 +0.4 636,246 - MIT1002_00589 0.62 +0.6 636,317 + MIT1002_00589 0.74 -0.3 636,325 - MIT1002_00589 0.76 -1.4 636,332 + MIT1002_00589 0.77 -3.0 636,332 + MIT1002_00589 0.77 -1.3 636,340 - MIT1002_00589 0.78 -1.1 636,354 - MIT1002_00589 0.81 +1.6 636,378 - MIT1002_00589 0.85 -1.7 636,484 + -1.2 636,553 + +0.5 636,581 - -2.3 636,614 - -1.5 636,614 - +2.1 636,659 + -1.6 636,760 - MIT1002_00590 0.14 +0.9 636,971 + MIT1002_00590 0.27 -1.1 636,971 + MIT1002_00590 0.27 -1.7 636,971 + MIT1002_00590 0.27 -1.4 636,979 - MIT1002_00590 0.27 +0.2 636,979 - MIT1002_00590 0.27 -1.2 637,021 + MIT1002_00590 0.30 -3.4 637,029 + MIT1002_00590 0.31 +0.6 637,154 - MIT1002_00590 0.38 +0.2 637,325 - MIT1002_00590 0.49 -2.1 637,325 - MIT1002_00590 0.49 +0.8 637,386 + MIT1002_00590 0.53 +0.3 637,387 + MIT1002_00590 0.53 +0.2 637,394 - MIT1002_00590 0.54 +1.0
Or see this region's nucleotide sequence