Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00536

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00534 and MIT1002_00535 are separated by 11 nucleotidesMIT1002_00535 and MIT1002_00536 are separated by 52 nucleotidesMIT1002_00536 and MIT1002_00537 are separated by 77 nucleotidesMIT1002_00537 and MIT1002_00538 are separated by 100 nucleotides MIT1002_00534: MIT1002_00534 - Aldehyde dehydrogenase, at 581,155 to 582,561 _00534 MIT1002_00535: MIT1002_00535 - putative dioxygenase of extradiol dioxygenase family protein, at 582,573 to 582,989 _00535 MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761 _00536 MIT1002_00537: MIT1002_00537 - NYN domain protein, at 583,839 to 584,309 _00537 MIT1002_00538: MIT1002_00538 - Gamma-glutamyltranspeptidase precursor, at 584,410 to 586,128 _00538 Position (kb) 583 584Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 582.139 kb on + strand, within MIT1002_00534at 582.154 kb on - strand, within MIT1002_00534at 582.154 kb on - strand, within MIT1002_00534at 582.171 kb on - strand, within MIT1002_00534at 582.205 kb on + strand, within MIT1002_00534at 582.205 kb on + strand, within MIT1002_00534at 582.213 kb on - strand, within MIT1002_00534at 582.223 kb on + strand, within MIT1002_00534at 582.258 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.263 kb on + strand, within MIT1002_00534at 582.271 kb on - strand, within MIT1002_00534at 582.271 kb on - strand, within MIT1002_00534at 582.344 kb on + strand, within MIT1002_00534at 582.346 kb on + strand, within MIT1002_00534at 582.359 kb on + strand, within MIT1002_00534at 582.359 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.369 kb on + strand, within MIT1002_00534at 582.377 kb on - strand, within MIT1002_00534at 582.377 kb on - strand, within MIT1002_00534at 582.388 kb on - strand, within MIT1002_00534at 582.536 kb on - strandat 582.629 kb on + strand, within MIT1002_00535at 582.637 kb on - strand, within MIT1002_00535at 582.641 kb on + strand, within MIT1002_00535at 582.649 kb on - strand, within MIT1002_00535at 582.660 kb on - strand, within MIT1002_00535at 582.692 kb on - strand, within MIT1002_00535at 582.721 kb on + strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.729 kb on - strand, within MIT1002_00535at 582.736 kb on - strand, within MIT1002_00535at 582.788 kb on + strand, within MIT1002_00535at 582.798 kb on + strand, within MIT1002_00535at 582.798 kb on + strand, within MIT1002_00535at 582.806 kb on - strand, within MIT1002_00535at 582.830 kb on - strand, within MIT1002_00535at 582.975 kb on - strandat 582.999 kb on + strandat 582.999 kb on - strandat 583.027 kb on - strandat 583.029 kb on + strandat 583.037 kb on - strandat 583.040 kb on + strandat 583.091 kb on + strandat 583.100 kb on - strandat 583.142 kb on + strand, within MIT1002_00536at 583.241 kb on + strand, within MIT1002_00536at 583.261 kb on - strand, within MIT1002_00536at 583.320 kb on - strand, within MIT1002_00536at 583.320 kb on - strand, within MIT1002_00536at 583.322 kb on + strand, within MIT1002_00536at 583.383 kb on - strand, within MIT1002_00536at 583.401 kb on - strand, within MIT1002_00536at 583.410 kb on + strand, within MIT1002_00536at 583.502 kb on + strand, within MIT1002_00536at 583.522 kb on - strand, within MIT1002_00536at 583.570 kb on - strand, within MIT1002_00536at 583.596 kb on + strand, within MIT1002_00536at 583.596 kb on + strand, within MIT1002_00536at 583.596 kb on + strand, within MIT1002_00536at 583.596 kb on + strand, within MIT1002_00536at 583.596 kb on + strand, within MIT1002_00536at 583.603 kb on - strand, within MIT1002_00536at 583.604 kb on - strand, within MIT1002_00536at 583.604 kb on - strand, within MIT1002_00536at 583.604 kb on - strand, within MIT1002_00536at 583.629 kb on + strand, within MIT1002_00536at 583.683 kb on - strand, within MIT1002_00536at 583.693 kb on - strandat 583.693 kb on - strandat 583.701 kb on - strandat 583.716 kb on + strandat 583.724 kb on - strandat 583.732 kb on + strandat 583.732 kb on + strandat 583.732 kb on + strandat 583.732 kb on + strandat 583.856 kb on - strandat 583.885 kb on - strandat 583.885 kb on - strandat 583.896 kb on - strand, within MIT1002_00537at 583.985 kb on - strand, within MIT1002_00537at 584.055 kb on - strand, within MIT1002_00537at 584.056 kb on - strand, within MIT1002_00537at 584.070 kb on + strand, within MIT1002_00537at 584.110 kb on - strand, within MIT1002_00537at 584.119 kb on + strand, within MIT1002_00537at 584.126 kb on - strand, within MIT1002_00537at 584.137 kb on + strand, within MIT1002_00537at 584.184 kb on + strand, within MIT1002_00537at 584.222 kb on + strand, within MIT1002_00537at 584.231 kb on - strand, within MIT1002_00537at 584.335 kb on - strandat 584.388 kb on + strandat 584.401 kb on - strandat 584.401 kb on - strandat 584.401 kb on - strandat 584.407 kb on + strandat 584.428 kb on + strandat 584.436 kb on - strandat 584.530 kb on - strandat 584.530 kb on - strandat 584.535 kb on - strandat 584.542 kb on - strandat 584.567 kb on - strandat 584.621 kb on + strand, within MIT1002_00538at 584.623 kb on + strand, within MIT1002_00538at 584.631 kb on - strand, within MIT1002_00538at 584.631 kb on - strand, within MIT1002_00538at 584.631 kb on - strand, within MIT1002_00538at 584.662 kb on + strand, within MIT1002_00538at 584.751 kb on + strand, within MIT1002_00538at 584.751 kb on + strand, within MIT1002_00538at 584.759 kb on - strand, within MIT1002_00538at 584.759 kb on - strand, within MIT1002_00538at 584.759 kb on - strand, within MIT1002_00538at 584.759 kb on - strand, within MIT1002_00538

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
remove
582,139 + MIT1002_00534 0.70 -1.0
582,154 - MIT1002_00534 0.71 -0.5
582,154 - MIT1002_00534 0.71 -0.2
582,171 - MIT1002_00534 0.72 -0.2
582,205 + MIT1002_00534 0.75 -0.6
582,205 + MIT1002_00534 0.75 -1.0
582,213 - MIT1002_00534 0.75 -0.3
582,223 + MIT1002_00534 0.76 -2.7
582,258 + MIT1002_00534 0.78 +0.8
582,263 + MIT1002_00534 0.79 -0.4
582,263 + MIT1002_00534 0.79 -0.5
582,263 + MIT1002_00534 0.79 -2.9
582,263 + MIT1002_00534 0.79 -0.7
582,271 - MIT1002_00534 0.79 -1.0
582,271 - MIT1002_00534 0.79 -1.3
582,344 + MIT1002_00534 0.85 +0.3
582,346 + MIT1002_00534 0.85 +0.4
582,359 + MIT1002_00534 0.86 -2.0
582,359 + MIT1002_00534 0.86 -2.8
582,369 + MIT1002_00534 0.86 +1.4
582,369 + MIT1002_00534 0.86 +0.8
582,369 + MIT1002_00534 0.86 -0.3
582,377 - MIT1002_00534 0.87 +0.0
582,377 - MIT1002_00534 0.87 +0.7
582,388 - MIT1002_00534 0.88 +1.5
582,536 - -0.1
582,629 + MIT1002_00535 0.13 +1.9
582,637 - MIT1002_00535 0.15 -2.6
582,641 + MIT1002_00535 0.16 +0.0
582,649 - MIT1002_00535 0.18 +0.5
582,660 - MIT1002_00535 0.21 +1.4
582,692 - MIT1002_00535 0.29 +0.1
582,721 + MIT1002_00535 0.35 -0.7
582,729 - MIT1002_00535 0.37 -0.1
582,729 - MIT1002_00535 0.37 -0.3
582,729 - MIT1002_00535 0.37 -0.4
582,736 - MIT1002_00535 0.39 -0.8
582,788 + MIT1002_00535 0.52 +1.3
582,798 + MIT1002_00535 0.54 +1.7
582,798 + MIT1002_00535 0.54 +1.8
582,806 - MIT1002_00535 0.56 +1.1
582,830 - MIT1002_00535 0.62 -2.4
582,975 - +0.3
582,999 + -1.3
582,999 - +1.7
583,027 - -1.9
583,029 + -2.2
583,037 - -3.7
583,040 + -0.7
583,091 + +2.7
583,100 - +1.6
583,142 + MIT1002_00536 0.14 -1.2
583,241 + MIT1002_00536 0.28 +0.5
583,261 - MIT1002_00536 0.30 -0.2
583,320 - MIT1002_00536 0.39 +0.5
583,320 - MIT1002_00536 0.39 -2.4
583,322 + MIT1002_00536 0.39 -1.1
583,383 - MIT1002_00536 0.47 +2.3
583,401 - MIT1002_00536 0.50 +0.6
583,410 + MIT1002_00536 0.51 +0.6
583,502 + MIT1002_00536 0.64 +1.0
583,522 - MIT1002_00536 0.67 +2.0
583,570 - MIT1002_00536 0.73 +0.8
583,596 + MIT1002_00536 0.77 +0.9
583,596 + MIT1002_00536 0.77 +0.2
583,596 + MIT1002_00536 0.77 -0.0
583,596 + MIT1002_00536 0.77 +1.4
583,596 + MIT1002_00536 0.77 -0.0
583,603 - MIT1002_00536 0.78 +1.2
583,604 - MIT1002_00536 0.78 +0.3
583,604 - MIT1002_00536 0.78 -0.1
583,604 - MIT1002_00536 0.78 +0.1
583,629 + MIT1002_00536 0.82 -1.0
583,683 - MIT1002_00536 0.89 -7.2
583,693 - +1.6
583,693 - -2.8
583,701 - +1.2
583,716 + +0.9
583,724 - +1.4
583,732 + -0.7
583,732 + -3.9
583,732 + +1.9
583,732 + +0.3
583,856 - -1.0
583,885 - +0.4
583,885 - +0.0
583,896 - MIT1002_00537 0.12 -0.7
583,985 - MIT1002_00537 0.31 +0.5
584,055 - MIT1002_00537 0.46 -2.0
584,056 - MIT1002_00537 0.46 -4.7
584,070 + MIT1002_00537 0.49 +1.1
584,110 - MIT1002_00537 0.58 +1.4
584,119 + MIT1002_00537 0.59 -0.4
584,126 - MIT1002_00537 0.61 -2.9
584,137 + MIT1002_00537 0.63 -0.4
584,184 + MIT1002_00537 0.73 -1.6
584,222 + MIT1002_00537 0.81 -0.7
584,231 - MIT1002_00537 0.83 -2.5
584,335 - -0.6
584,388 + +0.2
584,401 - -0.2
584,401 - -3.9
584,401 - +1.6
584,407 + +1.9
584,428 + +1.2
584,436 - -0.4
584,530 - +0.7
584,530 - -0.7
584,535 - +0.6
584,542 - +0.3
584,567 - -0.3
584,621 + MIT1002_00538 0.12 +0.9
584,623 + MIT1002_00538 0.12 -1.4
584,631 - MIT1002_00538 0.13 +1.2
584,631 - MIT1002_00538 0.13 -2.9
584,631 - MIT1002_00538 0.13 -0.2
584,662 + MIT1002_00538 0.15 -2.5
584,751 + MIT1002_00538 0.20 +0.3
584,751 + MIT1002_00538 0.20 +1.6
584,759 - MIT1002_00538 0.20 -0.1
584,759 - MIT1002_00538 0.20 +0.4
584,759 - MIT1002_00538 0.20 -1.9
584,759 - MIT1002_00538 0.20 +0.4

Or see this region's nucleotide sequence