Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00527 and MIT1002_00528 are separated by 283 nucleotides MIT1002_00528 and MIT1002_00529 are separated by 287 nucleotides
MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001
_00527
MIT1002_00528: MIT1002_00528 - putative membrane protein, at 575,285 to 575,617
_00528
MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774
_00529
Position (kb) 575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.338 kb on - strand, within MIT1002_00527 at 574.364 kb on - strand, within MIT1002_00527 at 574.372 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.391 kb on + strand, within MIT1002_00527 at 574.396 kb on + strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.399 kb on - strand, within MIT1002_00527 at 574.404 kb on - strand, within MIT1002_00527 at 574.433 kb on - strand, within MIT1002_00527 at 574.438 kb on - strand, within MIT1002_00527 at 574.442 kb on + strand, within MIT1002_00527 at 574.442 kb on + strand, within MIT1002_00527 at 574.448 kb on + strand, within MIT1002_00527 at 574.501 kb on + strand, within MIT1002_00527 at 574.507 kb on + strand, within MIT1002_00527 at 574.515 kb on - strand, within MIT1002_00527 at 574.524 kb on + strand, within MIT1002_00527 at 574.548 kb on + strand, within MIT1002_00527 at 574.689 kb on - strand, within MIT1002_00527 at 574.782 kb on - strand, within MIT1002_00527 at 574.871 kb on - strand at 574.901 kb on + strand at 574.901 kb on + strand at 574.906 kb on + strand at 574.909 kb on - strand at 574.955 kb on - strand at 575.041 kb on - strand at 575.041 kb on - strand at 575.058 kb on + strand at 575.060 kb on + strand at 575.066 kb on - strand at 575.117 kb on - strand at 575.213 kb on - strand at 575.263 kb on - strand at 575.266 kb on + strand at 575.275 kb on - strand at 575.276 kb on + strand at 575.337 kb on - strand, within MIT1002_00528 at 575.450 kb on - strand, within MIT1002_00528 at 575.452 kb on - strand, within MIT1002_00528 at 575.452 kb on - strand, within MIT1002_00528 at 575.463 kb on + strand, within MIT1002_00528 at 575.494 kb on + strand, within MIT1002_00528 at 575.508 kb on - strand, within MIT1002_00528 at 575.614 kb on + strand at 575.615 kb on + strand at 575.622 kb on - strand at 575.623 kb on - strand at 575.636 kb on + strand at 575.675 kb on + strand at 575.683 kb on - strand at 575.751 kb on + strand at 575.761 kb on - strand at 575.835 kb on + strand at 575.835 kb on + strand at 575.858 kb on + strand at 575.895 kb on + strand at 575.895 kb on + strand at 575.975 kb on + strand at 576.026 kb on + strand, within MIT1002_00529 at 576.094 kb on + strand, within MIT1002_00529 at 576.107 kb on - strand, within MIT1002_00529 at 576.172 kb on - strand, within MIT1002_00529 at 576.193 kb on + strand, within MIT1002_00529 at 576.201 kb on - strand, within MIT1002_00529 at 576.309 kb on - strand, within MIT1002_00529 at 576.344 kb on + strand, within MIT1002_00529 at 576.351 kb on + strand, within MIT1002_00529 at 576.358 kb on - strand, within MIT1002_00529 at 576.408 kb on - strand, within MIT1002_00529 at 576.457 kb on + strand, within MIT1002_00529 at 576.469 kb on + strand, within MIT1002_00529 at 576.537 kb on + strand, within MIT1002_00529
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1 remove 574,338 - MIT1002_00527 0.69 +0.1 574,364 - MIT1002_00527 0.70 -0.7 574,372 + MIT1002_00527 0.70 -2.6 574,391 + MIT1002_00527 0.71 +0.4 574,391 + MIT1002_00527 0.71 +1.4 574,391 + MIT1002_00527 0.71 -1.4 574,391 + MIT1002_00527 0.71 -0.4 574,391 + MIT1002_00527 0.71 +0.3 574,391 + MIT1002_00527 0.71 +0.2 574,391 + MIT1002_00527 0.71 -0.3 574,391 + MIT1002_00527 0.71 -0.7 574,391 + MIT1002_00527 0.71 -2.8 574,391 + MIT1002_00527 0.71 -3.3 574,396 + MIT1002_00527 0.71 +0.8 574,399 - MIT1002_00527 0.71 -1.1 574,399 - MIT1002_00527 0.71 +0.7 574,399 - MIT1002_00527 0.71 +0.5 574,399 - MIT1002_00527 0.71 +0.5 574,399 - MIT1002_00527 0.71 +0.5 574,399 - MIT1002_00527 0.71 +1.1 574,399 - MIT1002_00527 0.71 -0.2 574,399 - MIT1002_00527 0.71 -0.5 574,399 - MIT1002_00527 0.71 -0.5 574,404 - MIT1002_00527 0.72 -1.2 574,433 - MIT1002_00527 0.73 +0.5 574,438 - MIT1002_00527 0.73 +0.7 574,442 + MIT1002_00527 0.73 -0.5 574,442 + MIT1002_00527 0.73 +0.5 574,448 + MIT1002_00527 0.74 +2.2 574,501 + MIT1002_00527 0.76 +0.3 574,507 + MIT1002_00527 0.77 +1.7 574,515 - MIT1002_00527 0.77 -1.6 574,524 + MIT1002_00527 0.77 -1.5 574,548 + MIT1002_00527 0.78 -1.3 574,689 - MIT1002_00527 0.85 -2.3 574,782 - MIT1002_00527 0.90 -0.1 574,871 - -0.0 574,901 + +1.1 574,901 + +1.1 574,906 + +0.7 574,909 - +1.1 574,955 - +0.5 575,041 - -2.0 575,041 - +0.5 575,058 + +2.4 575,060 + +0.8 575,066 - +0.7 575,117 - -0.3 575,213 - +0.9 575,263 - +1.0 575,266 + -2.8 575,275 - -0.4 575,276 + +1.5 575,337 - MIT1002_00528 0.16 +0.4 575,450 - MIT1002_00528 0.50 +0.4 575,452 - MIT1002_00528 0.50 +2.3 575,452 - MIT1002_00528 0.50 +0.4 575,463 + MIT1002_00528 0.53 +1.3 575,494 + MIT1002_00528 0.63 -2.9 575,508 - MIT1002_00528 0.67 +0.3 575,614 + +0.4 575,615 + +0.1 575,622 - +0.7 575,623 - +0.3 575,636 + -1.0 575,675 + +1.1 575,683 - +0.6 575,751 + +2.1 575,761 - -0.7 575,835 + +0.7 575,835 + +0.3 575,858 + -2.2 575,895 + -1.0 575,895 + +0.0 575,975 + -2.5 576,026 + MIT1002_00529 0.14 +0.6 576,094 + MIT1002_00529 0.22 +0.0 576,107 - MIT1002_00529 0.23 -0.7 576,172 - MIT1002_00529 0.31 -0.5 576,193 + MIT1002_00529 0.33 +0.5 576,201 - MIT1002_00529 0.34 -2.2 576,309 - MIT1002_00529 0.46 +1.1 576,344 + MIT1002_00529 0.50 +1.1 576,351 + MIT1002_00529 0.51 +1.0 576,358 - MIT1002_00529 0.52 -0.9 576,408 - MIT1002_00529 0.58 +0.4 576,457 + MIT1002_00529 0.63 -0.6 576,469 + MIT1002_00529 0.65 +0.5 576,537 + MIT1002_00529 0.73 -0.6
Or see this region's nucleotide sequence