Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00418

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00417 and MIT1002_00418 are separated by 167 nucleotidesMIT1002_00418 and MIT1002_00419 are separated by 167 nucleotides MIT1002_00417: MIT1002_00417 - Ammonia transporter, at 449,467 to 450,714 _00417 MIT1002_00418: MIT1002_00418 - hypothetical protein, at 450,882 to 452,210 _00418 MIT1002_00419: MIT1002_00419 - Putative gamma-glutamyltransferase YwrD, at 452,378 to 454,069 _00419 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 449.889 kb on - strand, within MIT1002_00417at 449.905 kb on + strand, within MIT1002_00417at 449.940 kb on + strand, within MIT1002_00417at 449.948 kb on - strand, within MIT1002_00417at 449.989 kb on + strand, within MIT1002_00417at 450.031 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.057 kb on - strand, within MIT1002_00417at 450.074 kb on - strand, within MIT1002_00417at 450.102 kb on - strand, within MIT1002_00417at 450.127 kb on - strand, within MIT1002_00417at 450.140 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.158 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.163 kb on + strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.171 kb on - strand, within MIT1002_00417at 450.263 kb on - strand, within MIT1002_00417at 450.297 kb on - strand, within MIT1002_00417at 450.298 kb on - strand, within MIT1002_00417at 450.303 kb on + strand, within MIT1002_00417at 450.311 kb on - strand, within MIT1002_00417at 450.353 kb on - strand, within MIT1002_00417at 450.354 kb on + strand, within MIT1002_00417at 450.362 kb on - strand, within MIT1002_00417at 450.376 kb on - strand, within MIT1002_00417at 450.421 kb on + strand, within MIT1002_00417at 450.432 kb on + strand, within MIT1002_00417at 450.491 kb on + strand, within MIT1002_00417at 450.498 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.499 kb on - strand, within MIT1002_00417at 450.584 kb on + strand, within MIT1002_00417at 450.618 kb on + strandat 450.620 kb on + strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.628 kb on - strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.653 kb on + strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.661 kb on - strandat 450.668 kb on + strandat 450.693 kb on - strandat 450.709 kb on + strandat 450.798 kb on - strandat 452.214 kb on + strandat 452.275 kb on - strandat 452.300 kb on - strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.317 kb on - strandat 452.388 kb on - strandat 452.390 kb on - strandat 452.431 kb on - strandat 452.446 kb on - strandat 452.483 kb on - strandat 452.547 kb on + strandat 452.573 kb on - strand, within MIT1002_00419at 452.612 kb on - strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.685 kb on + strand, within MIT1002_00419at 452.706 kb on + strand, within MIT1002_00419at 452.788 kb on + strand, within MIT1002_00419at 452.806 kb on - strand, within MIT1002_00419at 452.808 kb on + strand, within MIT1002_00419at 452.839 kb on + strand, within MIT1002_00419at 452.844 kb on + strand, within MIT1002_00419at 452.845 kb on - strand, within MIT1002_00419at 452.847 kb on - strand, within MIT1002_00419at 452.854 kb on + strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.862 kb on - strand, within MIT1002_00419at 452.909 kb on + strand, within MIT1002_00419at 453.024 kb on - strand, within MIT1002_00419at 453.188 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419at 453.203 kb on - strand, within MIT1002_00419

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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449,889 - MIT1002_00417 0.34 +1.6
449,905 + MIT1002_00417 0.35 +0.8
449,940 + MIT1002_00417 0.38 -1.2
449,948 - MIT1002_00417 0.39 -0.0
449,989 + MIT1002_00417 0.42 -0.1
450,031 - MIT1002_00417 0.45 -0.1
450,057 - MIT1002_00417 0.47 +1.5
450,057 - MIT1002_00417 0.47 -0.4
450,074 - MIT1002_00417 0.49 +0.6
450,102 - MIT1002_00417 0.51 -0.4
450,127 - MIT1002_00417 0.53 +0.7
450,140 + MIT1002_00417 0.54 -1.1
450,158 + MIT1002_00417 0.55 -0.7
450,158 + MIT1002_00417 0.55 +0.6
450,163 + MIT1002_00417 0.56 -0.4
450,163 + MIT1002_00417 0.56 +1.9
450,163 + MIT1002_00417 0.56 -1.2
450,163 + MIT1002_00417 0.56 -0.3
450,171 - MIT1002_00417 0.56 +0.3
450,171 - MIT1002_00417 0.56 +0.7
450,171 - MIT1002_00417 0.56 -1.0
450,171 - MIT1002_00417 0.56 +0.6
450,263 - MIT1002_00417 0.64 -1.0
450,297 - MIT1002_00417 0.67 -0.6
450,298 - MIT1002_00417 0.67 +2.2
450,303 + MIT1002_00417 0.67 +0.7
450,311 - MIT1002_00417 0.68 -3.1
450,353 - MIT1002_00417 0.71 +0.3
450,354 + MIT1002_00417 0.71 +0.4
450,362 - MIT1002_00417 0.72 -2.0
450,376 - MIT1002_00417 0.73 +1.4
450,421 + MIT1002_00417 0.76 +1.0
450,432 + MIT1002_00417 0.77 -0.7
450,491 + MIT1002_00417 0.82 +0.6
450,498 - MIT1002_00417 0.83 +0.5
450,499 - MIT1002_00417 0.83 +1.1
450,499 - MIT1002_00417 0.83 -0.7
450,499 - MIT1002_00417 0.83 -1.7
450,584 + MIT1002_00417 0.90 +0.6
450,618 + +0.0
450,620 + +1.9
450,628 - +0.3
450,628 - +2.2
450,628 - -0.3
450,628 - -2.2
450,653 + -3.5
450,653 + -1.7
450,653 + +0.1
450,661 - -1.9
450,661 - +0.9
450,661 - -0.3
450,661 - +0.7
450,668 + +2.7
450,693 - -0.5
450,709 + +0.1
450,798 - -0.6
452,214 + +1.7
452,275 - +0.2
452,300 - -3.9
452,309 + +0.4
452,309 + +0.5
452,317 - -4.7
452,388 - -3.4
452,390 - +1.8
452,431 - -3.2
452,446 - -3.0
452,483 - +1.0
452,547 + -0.6
452,573 - MIT1002_00419 0.12 -0.7
452,612 - MIT1002_00419 0.14 -1.4
452,685 + MIT1002_00419 0.18 -1.0
452,685 + MIT1002_00419 0.18 -1.1
452,685 + MIT1002_00419 0.18 -1.8
452,706 + MIT1002_00419 0.19 +0.8
452,788 + MIT1002_00419 0.24 -0.3
452,806 - MIT1002_00419 0.25 -1.2
452,808 + MIT1002_00419 0.25 -1.4
452,839 + MIT1002_00419 0.27 -0.1
452,844 + MIT1002_00419 0.28 -0.2
452,845 - MIT1002_00419 0.28 +0.1
452,847 - MIT1002_00419 0.28 +1.1
452,854 + MIT1002_00419 0.28 -0.1
452,862 - MIT1002_00419 0.29 +0.9
452,862 - MIT1002_00419 0.29 +1.7
452,909 + MIT1002_00419 0.31 -0.1
453,024 - MIT1002_00419 0.38 +2.3
453,188 - MIT1002_00419 0.48 -0.9
453,203 - MIT1002_00419 0.49 +0.2
453,203 - MIT1002_00419 0.49 -1.0
453,203 - MIT1002_00419 0.49 +0.6

Or see this region's nucleotide sequence