Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00293

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00292 and MIT1002_00293 are separated by 275 nucleotidesMIT1002_00293 and MIT1002_00294 are separated by 67 nucleotides MIT1002_00292: MIT1002_00292 - hypothetical protein, at 315,009 to 315,551 _00292 MIT1002_00293: MIT1002_00293 - hypothetical protein, at 315,827 to 316,636 _00293 MIT1002_00294: MIT1002_00294 - hypothetical protein, at 316,704 to 317,075 _00294 Position (kb) 315 316 317Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 314.847 kb on - strandat 314.847 kb on - strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.852 kb on + strandat 314.855 kb on - strandat 314.857 kb on + strandat 314.857 kb on + strandat 314.857 kb on + strandat 314.860 kb on - strandat 314.860 kb on - strandat 314.860 kb on - strandat 314.860 kb on - strandat 314.860 kb on - strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.862 kb on + strandat 314.865 kb on - strandat 314.867 kb on + strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.870 kb on - strandat 314.878 kb on + strandat 314.881 kb on - strandat 314.886 kb on - strandat 314.886 kb on - strandat 314.886 kb on - strandat 314.886 kb on - strandat 314.886 kb on - strandat 314.908 kb on + strandat 314.909 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.910 kb on + strandat 314.917 kb on + strandat 314.918 kb on - strandat 314.918 kb on - strandat 314.918 kb on - strandat 314.918 kb on - strandat 314.918 kb on - strandat 314.976 kb on + strandat 314.986 kb on + strandat 314.988 kb on + strandat 314.990 kb on + strandat 314.990 kb on + strandat 314.990 kb on + strandat 314.996 kb on + strandat 314.996 kb on - strandat 314.998 kb on + strandat 314.998 kb on - strandat 314.998 kb on - strandat 315.059 kb on + strandat 315.068 kb on - strand, within MIT1002_00292at 315.099 kb on - strand, within MIT1002_00292at 315.153 kb on + strand, within MIT1002_00292at 315.165 kb on + strand, within MIT1002_00292at 315.184 kb on - strand, within MIT1002_00292at 315.261 kb on + strand, within MIT1002_00292at 315.264 kb on - strand, within MIT1002_00292at 315.271 kb on + strand, within MIT1002_00292at 315.271 kb on + strand, within MIT1002_00292at 315.277 kb on + strand, within MIT1002_00292at 315.278 kb on + strand, within MIT1002_00292at 315.278 kb on + strand, within MIT1002_00292at 315.278 kb on + strand, within MIT1002_00292at 315.284 kb on - strand, within MIT1002_00292at 315.285 kb on - strand, within MIT1002_00292at 315.285 kb on - strand, within MIT1002_00292at 315.285 kb on - strand, within MIT1002_00292at 315.286 kb on - strand, within MIT1002_00292at 315.286 kb on - strand, within MIT1002_00292at 315.288 kb on + strand, within MIT1002_00292at 315.300 kb on + strand, within MIT1002_00292at 315.302 kb on + strand, within MIT1002_00292at 315.356 kb on + strand, within MIT1002_00292at 315.356 kb on + strand, within MIT1002_00292at 315.356 kb on + strand, within MIT1002_00292at 315.364 kb on - strand, within MIT1002_00292at 315.364 kb on - strand, within MIT1002_00292at 315.364 kb on - strand, within MIT1002_00292at 315.364 kb on - strand, within MIT1002_00292at 315.364 kb on - strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.378 kb on + strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.386 kb on - strand, within MIT1002_00292at 315.388 kb on - strand, within MIT1002_00292at 315.393 kb on + strand, within MIT1002_00292at 315.393 kb on + strand, within MIT1002_00292at 315.393 kb on + strand, within MIT1002_00292at 315.399 kb on - strand, within MIT1002_00292at 315.399 kb on - strand, within MIT1002_00292at 315.413 kb on - strand, within MIT1002_00292at 315.430 kb on - strand, within MIT1002_00292at 315.479 kb on + strand, within MIT1002_00292at 315.480 kb on - strand, within MIT1002_00292at 315.487 kb on - strand, within MIT1002_00292at 315.487 kb on - strand, within MIT1002_00292at 315.496 kb on + strand, within MIT1002_00292at 315.504 kb on - strandat 315.540 kb on + strandat 315.555 kb on + strandat 315.558 kb on - strandat 315.562 kb on + strandat 315.563 kb on - strandat 315.574 kb on + strandat 315.582 kb on - strandat 315.582 kb on - strandat 315.591 kb on + strandat 315.591 kb on + strandat 315.599 kb on - strandat 315.599 kb on - strandat 315.609 kb on + strandat 315.611 kb on - strandat 315.709 kb on + strandat 315.709 kb on + strandat 315.741 kb on + strandat 315.741 kb on + strandat 315.741 kb on + strandat 315.824 kb on - strandat 315.843 kb on + strandat 315.843 kb on + strandat 315.845 kb on + strandat 315.858 kb on - strandat 315.871 kb on + strandat 315.871 kb on + strandat 315.871 kb on + strandat 315.877 kb on - strandat 315.889 kb on + strandat 315.897 kb on - strandat 315.899 kb on + strandat 315.899 kb on + strandat 315.900 kb on + strandat 315.905 kb on - strandat 315.906 kb on + strandat 315.906 kb on + strandat 315.906 kb on + strandat 315.907 kb on - strandat 315.907 kb on - strandat 315.907 kb on - strandat 315.908 kb on - strand, within MIT1002_00293at 315.908 kb on - strand, within MIT1002_00293at 315.908 kb on - strand, within MIT1002_00293at 315.911 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.914 kb on - strand, within MIT1002_00293at 315.915 kb on - strand, within MIT1002_00293at 315.916 kb on - strand, within MIT1002_00293at 315.916 kb on - strand, within MIT1002_00293at 315.976 kb on + strand, within MIT1002_00293at 315.995 kb on + strand, within MIT1002_00293at 316.001 kb on - strand, within MIT1002_00293at 316.001 kb on - strand, within MIT1002_00293at 316.009 kb on - strand, within MIT1002_00293at 316.017 kb on - strand, within MIT1002_00293at 316.023 kb on - strand, within MIT1002_00293at 316.027 kb on + strand, within MIT1002_00293at 316.031 kb on - strand, within MIT1002_00293at 316.033 kb on - strand, within MIT1002_00293at 316.051 kb on + strand, within MIT1002_00293at 316.072 kb on - strand, within MIT1002_00293at 316.086 kb on + strand, within MIT1002_00293at 316.203 kb on + strand, within MIT1002_00293at 316.210 kb on + strand, within MIT1002_00293at 316.210 kb on + strand, within MIT1002_00293at 316.217 kb on - strand, within MIT1002_00293at 316.224 kb on - strand, within MIT1002_00293at 316.302 kb on + strand, within MIT1002_00293at 316.318 kb on - strand, within MIT1002_00293at 316.327 kb on - strand, within MIT1002_00293at 316.327 kb on - strand, within MIT1002_00293at 316.391 kb on - strand, within MIT1002_00293at 316.438 kb on + strand, within MIT1002_00293at 316.487 kb on - strand, within MIT1002_00293at 316.514 kb on - strand, within MIT1002_00293at 316.560 kb on + strandat 316.560 kb on - strandat 316.571 kb on - strandat 316.645 kb on - strandat 316.646 kb on + strandat 316.667 kb on - strandat 316.734 kb on - strandat 316.736 kb on + strandat 316.744 kb on - strand, within MIT1002_00294at 316.744 kb on - strand, within MIT1002_00294at 316.744 kb on - strand, within MIT1002_00294at 316.777 kb on + strand, within MIT1002_00294at 316.777 kb on - strand, within MIT1002_00294at 316.785 kb on + strand, within MIT1002_00294at 316.786 kb on + strand, within MIT1002_00294at 316.793 kb on + strand, within MIT1002_00294at 316.793 kb on + strand, within MIT1002_00294at 316.793 kb on + strand, within MIT1002_00294at 316.794 kb on - strand, within MIT1002_00294at 316.803 kb on + strand, within MIT1002_00294at 316.803 kb on + strand, within MIT1002_00294at 316.803 kb on + strand, within MIT1002_00294at 316.811 kb on - strand, within MIT1002_00294at 316.811 kb on - strand, within MIT1002_00294at 316.864 kb on - strand, within MIT1002_00294at 316.869 kb on - strand, within MIT1002_00294at 316.919 kb on + strand, within MIT1002_00294at 316.919 kb on + strand, within MIT1002_00294at 316.927 kb on - strand, within MIT1002_00294at 316.932 kb on - strand, within MIT1002_00294at 316.965 kb on + strand, within MIT1002_00294at 316.965 kb on + strand, within MIT1002_00294at 316.973 kb on + strand, within MIT1002_00294at 316.973 kb on - strand, within MIT1002_00294at 316.981 kb on + strand, within MIT1002_00294at 316.981 kb on - strand, within MIT1002_00294at 316.981 kb on - strand, within MIT1002_00294at 316.988 kb on + strand, within MIT1002_00294at 316.993 kb on + strand, within MIT1002_00294at 316.996 kb on - strand, within MIT1002_00294at 316.998 kb on + strand, within MIT1002_00294at 316.998 kb on + strand, within MIT1002_00294at 316.998 kb on + strand, within MIT1002_00294at 316.998 kb on + strand, within MIT1002_00294at 317.001 kb on - strand, within MIT1002_00294at 317.001 kb on - strand, within MIT1002_00294at 317.005 kb on + strand, within MIT1002_00294at 317.005 kb on + strand, within MIT1002_00294at 317.006 kb on - strand, within MIT1002_00294at 317.006 kb on - strand, within MIT1002_00294at 317.006 kb on - strand, within MIT1002_00294at 317.016 kb on + strand, within MIT1002_00294at 317.071 kb on - strandat 317.132 kb on + strandat 317.155 kb on + strandat 317.176 kb on - strandat 317.220 kb on - strandat 317.237 kb on + strandat 317.238 kb on + strandat 317.245 kb on - strandat 317.273 kb on + strandat 317.281 kb on - strandat 317.351 kb on + strandat 317.351 kb on + strandat 317.461 kb on + strandat 317.461 kb on + strandat 317.461 kb on + strandat 317.461 kb on + strandat 317.469 kb on - strandat 317.469 kb on - strandat 317.469 kb on - strandat 317.469 kb on - strandat 317.469 kb on - strandat 317.469 kb on - strandat 317.511 kb on - strandat 317.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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314,847 - -0.4
314,847 - -3.7
314,852 + +0.4
314,852 + -2.4
314,852 + -0.3
314,852 + +0.1
314,852 + -3.5
314,852 + -1.3
314,852 + +1.6
314,852 + -0.6
314,852 + +0.9
314,855 - +0.6
314,857 + +0.4
314,857 + -1.8
314,857 + -0.0
314,860 - -0.5
314,860 - -0.0
314,860 - -0.5
314,860 - -1.6
314,860 - -0.0
314,862 + -0.7
314,862 + +0.9
314,862 + -1.9
314,862 + -1.4
314,862 + -1.1
314,862 + +0.0
314,862 + -1.3
314,862 + -2.0
314,862 + -1.9
314,862 + -0.9
314,862 + +0.3
314,862 + -2.4
314,862 + -1.7
314,862 + +0.2
314,865 - +0.5
314,867 + +0.1
314,870 - -0.8
314,870 - +0.4
314,870 - -0.9
314,870 - +0.1
314,870 - +1.9
314,870 - -0.8
314,870 - -0.5
314,870 - -1.3
314,870 - +1.8
314,878 + -1.2
314,881 - +1.0
314,886 - +0.1
314,886 - +1.0
314,886 - +0.5
314,886 - +0.4
314,886 - -1.3
314,908 + -0.9
314,909 + +0.3
314,910 + -0.4
314,910 + +0.1
314,910 + -2.5
314,910 + +0.5
314,910 + +1.5
314,910 + -2.4
314,910 + +1.3
314,917 + -1.9
314,918 - +0.5
314,918 - -0.2
314,918 - +0.1
314,918 - +1.4
314,918 - -1.9
314,976 + +0.7
314,986 + -1.2
314,988 + -0.5
314,990 + -1.6
314,990 + -1.5
314,990 + +0.3
314,996 + +1.0
314,996 - -0.9
314,998 + -0.5
314,998 - -4.3
314,998 - -3.5
315,059 + +0.6
315,068 - MIT1002_00292 0.11 -1.0
315,099 - MIT1002_00292 0.17 +0.4
315,153 + MIT1002_00292 0.27 -1.7
315,165 + MIT1002_00292 0.29 +1.2
315,184 - MIT1002_00292 0.32 +0.1
315,261 + MIT1002_00292 0.46 -1.3
315,264 - MIT1002_00292 0.47 -0.3
315,271 + MIT1002_00292 0.48 -0.5
315,271 + MIT1002_00292 0.48 +2.3
315,277 + MIT1002_00292 0.49 +0.1
315,278 + MIT1002_00292 0.50 -1.8
315,278 + MIT1002_00292 0.50 +1.0
315,278 + MIT1002_00292 0.50 -3.1
315,284 - MIT1002_00292 0.51 +0.3
315,285 - MIT1002_00292 0.51 -0.8
315,285 - MIT1002_00292 0.51 -0.9
315,285 - MIT1002_00292 0.51 +1.1
315,286 - MIT1002_00292 0.51 -1.0
315,286 - MIT1002_00292 0.51 +0.2
315,288 + MIT1002_00292 0.51 +0.7
315,300 + MIT1002_00292 0.54 +2.4
315,302 + MIT1002_00292 0.54 -0.7
315,356 + MIT1002_00292 0.64 +0.9
315,356 + MIT1002_00292 0.64 +0.3
315,356 + MIT1002_00292 0.64 +0.5
315,364 - MIT1002_00292 0.65 -0.4
315,364 - MIT1002_00292 0.65 +1.7
315,364 - MIT1002_00292 0.65 +0.1
315,364 - MIT1002_00292 0.65 -2.1
315,364 - MIT1002_00292 0.65 +1.7
315,378 + MIT1002_00292 0.68 -1.3
315,378 + MIT1002_00292 0.68 +1.8
315,378 + MIT1002_00292 0.68 +0.5
315,378 + MIT1002_00292 0.68 +2.9
315,378 + MIT1002_00292 0.68 +0.9
315,378 + MIT1002_00292 0.68 -2.5
315,386 - MIT1002_00292 0.69 +0.6
315,386 - MIT1002_00292 0.69 +0.9
315,386 - MIT1002_00292 0.69 +0.7
315,386 - MIT1002_00292 0.69 -1.8
315,386 - MIT1002_00292 0.69 -0.2
315,386 - MIT1002_00292 0.69 +0.7
315,388 - MIT1002_00292 0.70 -2.0
315,393 + MIT1002_00292 0.71 +1.0
315,393 + MIT1002_00292 0.71 +0.1
315,393 + MIT1002_00292 0.71 +0.3
315,399 - MIT1002_00292 0.72 -0.6
315,399 - MIT1002_00292 0.72 -0.1
315,413 - MIT1002_00292 0.74 +1.5
315,430 - MIT1002_00292 0.78 +0.4
315,479 + MIT1002_00292 0.87 +1.1
315,480 - MIT1002_00292 0.87 +0.2
315,487 - MIT1002_00292 0.88 -0.1
315,487 - MIT1002_00292 0.88 -1.4
315,496 + MIT1002_00292 0.90 +0.3
315,504 - +1.0
315,540 + +0.3
315,555 + +0.0
315,558 - +1.6
315,562 + -0.0
315,563 - +2.3
315,574 + -2.0
315,582 - -2.3
315,582 - +2.5
315,591 + -0.4
315,591 + -2.0
315,599 - -0.2
315,599 - -0.2
315,609 + -0.3
315,611 - -0.6
315,709 + -0.8
315,709 + +0.3
315,741 + +0.3
315,741 + +0.3
315,741 + +1.1
315,824 - -0.1
315,843 + +0.3
315,843 + -3.2
315,845 + +0.3
315,858 - -0.5
315,871 + -0.5
315,871 + -0.4
315,871 + +0.2
315,877 - +0.6
315,889 + -0.6
315,897 - +0.2
315,899 + +1.1
315,899 + -1.3
315,900 + +0.3
315,905 - -0.8
315,906 + -2.8
315,906 + +0.0
315,906 + +0.2
315,907 - +1.6
315,907 - -0.7
315,907 - +0.0
315,908 - MIT1002_00293 0.10 +0.8
315,908 - MIT1002_00293 0.10 -0.5
315,908 - MIT1002_00293 0.10 -1.8
315,911 - MIT1002_00293 0.10 -0.5
315,914 - MIT1002_00293 0.11 +0.8
315,914 - MIT1002_00293 0.11 +0.7
315,914 - MIT1002_00293 0.11 +0.6
315,914 - MIT1002_00293 0.11 -1.2
315,914 - MIT1002_00293 0.11 -0.5
315,914 - MIT1002_00293 0.11 +2.2
315,914 - MIT1002_00293 0.11 +0.5
315,915 - MIT1002_00293 0.11 +0.1
315,916 - MIT1002_00293 0.11 +1.0
315,916 - MIT1002_00293 0.11 +2.0
315,976 + MIT1002_00293 0.18 -1.5
315,995 + MIT1002_00293 0.21 +0.9
316,001 - MIT1002_00293 0.21 -0.8
316,001 - MIT1002_00293 0.21 -0.5
316,009 - MIT1002_00293 0.22 +0.1
316,017 - MIT1002_00293 0.23 -0.3
316,023 - MIT1002_00293 0.24 +0.0
316,027 + MIT1002_00293 0.25 -0.2
316,031 - MIT1002_00293 0.25 -0.5
316,033 - MIT1002_00293 0.25 +0.3
316,051 + MIT1002_00293 0.28 -0.8
316,072 - MIT1002_00293 0.30 +0.8
316,086 + MIT1002_00293 0.32 +2.5
316,203 + MIT1002_00293 0.46 -2.5
316,210 + MIT1002_00293 0.47 -3.2
316,210 + MIT1002_00293 0.47 -0.6
316,217 - MIT1002_00293 0.48 +1.5
316,224 - MIT1002_00293 0.49 +0.1
316,302 + MIT1002_00293 0.59 +0.4
316,318 - MIT1002_00293 0.61 +0.2
316,327 - MIT1002_00293 0.62 +2.4
316,327 - MIT1002_00293 0.62 +0.8
316,391 - MIT1002_00293 0.70 -1.2
316,438 + MIT1002_00293 0.75 -0.2
316,487 - MIT1002_00293 0.81 +1.2
316,514 - MIT1002_00293 0.85 +0.1
316,560 + -4.5
316,560 - +0.3
316,571 - -3.6
316,645 - -0.0
316,646 + -1.2
316,667 - +0.0
316,734 - +0.1
316,736 + +0.1
316,744 - MIT1002_00294 0.11 -3.6
316,744 - MIT1002_00294 0.11 +1.2
316,744 - MIT1002_00294 0.11 +0.1
316,777 + MIT1002_00294 0.20 +1.5
316,777 - MIT1002_00294 0.20 +0.0
316,785 + MIT1002_00294 0.22 +0.4
316,786 + MIT1002_00294 0.22 -2.5
316,793 + MIT1002_00294 0.24 -0.6
316,793 + MIT1002_00294 0.24 +0.1
316,793 + MIT1002_00294 0.24 +0.3
316,794 - MIT1002_00294 0.24 -0.3
316,803 + MIT1002_00294 0.27 -2.2
316,803 + MIT1002_00294 0.27 -1.0
316,803 + MIT1002_00294 0.27 +1.6
316,811 - MIT1002_00294 0.29 -4.0
316,811 - MIT1002_00294 0.29 +0.5
316,864 - MIT1002_00294 0.43 -0.8
316,869 - MIT1002_00294 0.44 -4.0
316,919 + MIT1002_00294 0.58 +0.6
316,919 + MIT1002_00294 0.58 -0.9
316,927 - MIT1002_00294 0.60 -0.2
316,932 - MIT1002_00294 0.61 -5.1
316,965 + MIT1002_00294 0.70 -2.4
316,965 + MIT1002_00294 0.70 -1.4
316,973 + MIT1002_00294 0.72 +0.4
316,973 - MIT1002_00294 0.72 -4.2
316,981 + MIT1002_00294 0.74 -0.0
316,981 - MIT1002_00294 0.74 -0.4
316,981 - MIT1002_00294 0.74 +0.4
316,988 + MIT1002_00294 0.76 +0.8
316,993 + MIT1002_00294 0.78 +1.0
316,996 - MIT1002_00294 0.78 +1.1
316,998 + MIT1002_00294 0.79 +1.1
316,998 + MIT1002_00294 0.79 +0.6
316,998 + MIT1002_00294 0.79 +0.2
316,998 + MIT1002_00294 0.79 -2.5
317,001 - MIT1002_00294 0.80 -2.4
317,001 - MIT1002_00294 0.80 +0.3
317,005 + MIT1002_00294 0.81 +0.8
317,005 + MIT1002_00294 0.81 -0.6
317,006 - MIT1002_00294 0.81 -0.5
317,006 - MIT1002_00294 0.81 -0.2
317,006 - MIT1002_00294 0.81 +0.4
317,016 + MIT1002_00294 0.84 -0.8
317,071 - +1.2
317,132 + -2.5
317,155 + +0.8
317,176 - +1.5
317,220 - +0.0
317,237 + -0.4
317,238 + +0.1
317,245 - +0.3
317,273 + -0.1
317,281 - -0.3
317,351 + -1.0
317,351 + -0.3
317,461 + +1.1
317,461 + -0.9
317,461 + -2.9
317,461 + +0.4
317,469 - -0.9
317,469 - +0.6
317,469 - +0.8
317,469 - +0.7
317,469 - +0.6
317,469 - -0.1
317,511 - +1.3
317,548 - -3.5

Or see this region's nucleotide sequence