Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00142 and MIT1002_00143 are separated by 81 nucleotides MIT1002_00143 and MIT1002_00144 are separated by 135 nucleotides MIT1002_00144 and MIT1002_00145 are separated by 132 nucleotides
MIT1002_00142: MIT1002_00142 - Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase), at 154,249 to 155,121
_00142
MIT1002_00143: MIT1002_00143 - hypothetical protein, at 155,203 to 156,645
_00143
MIT1002_00144: MIT1002_00144 - GTP cyclohydrolase-2, at 156,781 to 157,395
_00144
MIT1002_00145: MIT1002_00145 - Cyclic di-GMP phosphodiesterase Gmr, at 157,528 to 160,368
_00145
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.335 kb on + strand at 154.353 kb on - strand, within MIT1002_00142 at 154.388 kb on + strand, within MIT1002_00142 at 154.407 kb on + strand, within MIT1002_00142 at 154.412 kb on + strand, within MIT1002_00142 at 154.412 kb on + strand, within MIT1002_00142 at 154.420 kb on - strand, within MIT1002_00142 at 154.420 kb on - strand, within MIT1002_00142 at 154.450 kb on - strand, within MIT1002_00142 at 154.477 kb on + strand, within MIT1002_00142 at 154.502 kb on + strand, within MIT1002_00142 at 154.510 kb on - strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.548 kb on + strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.556 kb on - strand, within MIT1002_00142 at 154.576 kb on + strand, within MIT1002_00142 at 154.647 kb on + strand, within MIT1002_00142 at 154.647 kb on + strand, within MIT1002_00142 at 154.652 kb on + strand, within MIT1002_00142 at 154.652 kb on + strand, within MIT1002_00142 at 154.660 kb on - strand, within MIT1002_00142 at 154.744 kb on - strand, within MIT1002_00142 at 154.744 kb on - strand, within MIT1002_00142 at 154.768 kb on + strand, within MIT1002_00142 at 154.776 kb on - strand, within MIT1002_00142 at 154.976 kb on - strand, within MIT1002_00142 at 154.981 kb on - strand, within MIT1002_00142 at 154.993 kb on + strand, within MIT1002_00142 at 154.998 kb on + strand, within MIT1002_00142 at 155.001 kb on - strand, within MIT1002_00142 at 155.006 kb on - strand, within MIT1002_00142 at 155.079 kb on - strand at 155.079 kb on - strand at 155.079 kb on - strand at 155.099 kb on + strand at 155.294 kb on + strand at 155.334 kb on - strand at 155.446 kb on - strand, within MIT1002_00143 at 155.465 kb on + strand, within MIT1002_00143 at 155.465 kb on + strand, within MIT1002_00143 at 155.558 kb on - strand, within MIT1002_00143 at 155.562 kb on + strand, within MIT1002_00143 at 155.562 kb on + strand, within MIT1002_00143 at 155.762 kb on + strand, within MIT1002_00143 at 155.774 kb on - strand, within MIT1002_00143 at 155.807 kb on + strand, within MIT1002_00143 at 155.807 kb on - strand, within MIT1002_00143 at 155.829 kb on - strand, within MIT1002_00143 at 155.866 kb on - strand, within MIT1002_00143 at 155.949 kb on - strand, within MIT1002_00143 at 155.995 kb on - strand, within MIT1002_00143 at 156.009 kb on + strand, within MIT1002_00143 at 156.014 kb on - strand, within MIT1002_00143 at 156.072 kb on - strand, within MIT1002_00143 at 156.082 kb on - strand, within MIT1002_00143 at 156.150 kb on - strand, within MIT1002_00143 at 156.165 kb on + strand, within MIT1002_00143 at 156.207 kb on - strand, within MIT1002_00143 at 156.207 kb on - strand, within MIT1002_00143 at 156.232 kb on + strand, within MIT1002_00143 at 156.232 kb on + strand, within MIT1002_00143 at 156.244 kb on + strand, within MIT1002_00143 at 156.305 kb on + strand, within MIT1002_00143 at 156.305 kb on + strand, within MIT1002_00143 at 156.344 kb on - strand, within MIT1002_00143 at 156.382 kb on - strand, within MIT1002_00143 at 156.384 kb on + strand, within MIT1002_00143 at 156.477 kb on + strand, within MIT1002_00143 at 156.512 kb on - strand at 156.514 kb on + strand at 156.514 kb on + strand at 156.522 kb on - strand at 156.522 kb on - strand at 156.522 kb on - strand at 156.540 kb on + strand at 156.602 kb on + strand at 156.695 kb on + strand at 156.704 kb on + strand at 156.705 kb on + strand at 156.712 kb on - strand at 156.773 kb on + strand at 156.773 kb on + strand at 157.495 kb on - strand at 157.569 kb on + strand at 157.570 kb on + strand at 157.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1 remove 154,335 + +1.3 154,353 - MIT1002_00142 0.12 -0.8 154,388 + MIT1002_00142 0.16 +0.3 154,407 + MIT1002_00142 0.18 +0.5 154,412 + MIT1002_00142 0.19 -2.4 154,412 + MIT1002_00142 0.19 -1.5 154,420 - MIT1002_00142 0.20 -1.3 154,420 - MIT1002_00142 0.20 +0.5 154,450 - MIT1002_00142 0.23 -0.4 154,477 + MIT1002_00142 0.26 +0.7 154,502 + MIT1002_00142 0.29 -1.1 154,510 - MIT1002_00142 0.30 +1.0 154,548 + MIT1002_00142 0.34 -0.5 154,548 + MIT1002_00142 0.34 -1.3 154,548 + MIT1002_00142 0.34 +0.5 154,556 - MIT1002_00142 0.35 +0.5 154,556 - MIT1002_00142 0.35 -0.9 154,556 - MIT1002_00142 0.35 -0.2 154,576 + MIT1002_00142 0.37 +0.0 154,647 + MIT1002_00142 0.46 +0.4 154,647 + MIT1002_00142 0.46 +1.1 154,652 + MIT1002_00142 0.46 +1.2 154,652 + MIT1002_00142 0.46 -0.1 154,660 - MIT1002_00142 0.47 +0.5 154,744 - MIT1002_00142 0.57 -1.1 154,744 - MIT1002_00142 0.57 +1.0 154,768 + MIT1002_00142 0.59 -3.0 154,776 - MIT1002_00142 0.60 -3.3 154,976 - MIT1002_00142 0.83 +0.4 154,981 - MIT1002_00142 0.84 -0.2 154,993 + MIT1002_00142 0.85 +1.5 154,998 + MIT1002_00142 0.86 -1.3 155,001 - MIT1002_00142 0.86 -0.3 155,006 - MIT1002_00142 0.87 +0.4 155,079 - -0.4 155,079 - -0.3 155,079 - -0.5 155,099 + +1.1 155,294 + +0.3 155,334 - +0.1 155,446 - MIT1002_00143 0.17 -1.9 155,465 + MIT1002_00143 0.18 -0.9 155,465 + MIT1002_00143 0.18 -1.1 155,558 - MIT1002_00143 0.25 -1.3 155,562 + MIT1002_00143 0.25 +0.4 155,562 + MIT1002_00143 0.25 -2.5 155,762 + MIT1002_00143 0.39 +0.2 155,774 - MIT1002_00143 0.40 -0.8 155,807 + MIT1002_00143 0.42 -2.2 155,807 - MIT1002_00143 0.42 -0.7 155,829 - MIT1002_00143 0.43 +0.4 155,866 - MIT1002_00143 0.46 -2.0 155,949 - MIT1002_00143 0.52 -0.5 155,995 - MIT1002_00143 0.55 -0.2 156,009 + MIT1002_00143 0.56 +1.8 156,014 - MIT1002_00143 0.56 -1.7 156,072 - MIT1002_00143 0.60 -0.3 156,082 - MIT1002_00143 0.61 +0.1 156,150 - MIT1002_00143 0.66 -1.1 156,165 + MIT1002_00143 0.67 +0.0 156,207 - MIT1002_00143 0.70 +1.0 156,207 - MIT1002_00143 0.70 +0.0 156,232 + MIT1002_00143 0.71 +1.5 156,232 + MIT1002_00143 0.71 -1.1 156,244 + MIT1002_00143 0.72 +0.2 156,305 + MIT1002_00143 0.76 +0.5 156,305 + MIT1002_00143 0.76 -0.1 156,344 - MIT1002_00143 0.79 -0.8 156,382 - MIT1002_00143 0.82 -0.1 156,384 + MIT1002_00143 0.82 -2.5 156,477 + MIT1002_00143 0.88 +0.0 156,512 - +1.9 156,514 + -1.5 156,514 + +0.1 156,522 - -1.5 156,522 - +1.0 156,522 - -2.8 156,540 + -3.5 156,602 + +0.2 156,695 + -0.0 156,704 + -3.5 156,705 + +0.4 156,712 - -1.5 156,773 + -2.8 156,773 + +0.7 157,495 - +0.6 157,569 + +0.5 157,570 + -0.1 157,619 - -1.1
Or see this region's nucleotide sequence