Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00137

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00135 and MIT1002_00136 are separated by 56 nucleotidesMIT1002_00136 and MIT1002_00137 are separated by 113 nucleotidesMIT1002_00137 and MIT1002_00138 overlap by 4 nucleotides MIT1002_00135: MIT1002_00135 - Multidrug-efflux transporter MexB, at 144,496 to 147,594 _00135 MIT1002_00136: MIT1002_00136 - Esterase/lipase, at 147,651 to 148,148 _00136 MIT1002_00137: MIT1002_00137 - Propionyl-CoA:succinate CoA transferase, at 148,262 to 150,103 _00137 MIT1002_00138: MIT1002_00138 - Histone deacetylase-like amidohydrolase, at 150,100 to 151,080 _00138 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 147.302 kb on + strandat 147.352 kb on + strandat 147.360 kb on - strandat 147.400 kb on + strandat 147.400 kb on + strandat 147.439 kb on - strandat 147.439 kb on - strandat 147.496 kb on - strandat 147.579 kb on - strandat 147.688 kb on + strandat 147.690 kb on + strandat 147.739 kb on - strand, within MIT1002_00136at 147.768 kb on + strand, within MIT1002_00136at 147.776 kb on - strand, within MIT1002_00136at 147.786 kb on - strand, within MIT1002_00136at 147.786 kb on - strand, within MIT1002_00136at 147.809 kb on + strand, within MIT1002_00136at 147.837 kb on + strand, within MIT1002_00136at 147.847 kb on + strand, within MIT1002_00136at 147.865 kb on + strand, within MIT1002_00136at 147.865 kb on + strand, within MIT1002_00136at 147.865 kb on + strand, within MIT1002_00136at 147.867 kb on + strand, within MIT1002_00136at 147.873 kb on - strand, within MIT1002_00136at 147.911 kb on + strand, within MIT1002_00136at 147.919 kb on + strand, within MIT1002_00136at 147.961 kb on + strand, within MIT1002_00136at 147.979 kb on + strand, within MIT1002_00136at 148.000 kb on + strand, within MIT1002_00136at 148.050 kb on + strand, within MIT1002_00136at 148.163 kb on + strandat 148.163 kb on + strandat 148.171 kb on - strandat 148.171 kb on - strandat 148.171 kb on - strandat 148.171 kb on - strandat 148.248 kb on - strandat 148.248 kb on - strandat 148.248 kb on - strandat 148.248 kb on - strandat 148.286 kb on + strandat 148.293 kb on + strandat 148.341 kb on + strandat 148.356 kb on + strandat 148.422 kb on - strandat 148.522 kb on + strand, within MIT1002_00137at 148.532 kb on + strand, within MIT1002_00137at 148.532 kb on + strand, within MIT1002_00137at 148.532 kb on + strand, within MIT1002_00137at 148.532 kb on + strand, within MIT1002_00137at 148.535 kb on - strand, within MIT1002_00137at 148.540 kb on - strand, within MIT1002_00137at 148.540 kb on - strand, within MIT1002_00137at 148.540 kb on - strand, within MIT1002_00137at 148.606 kb on + strand, within MIT1002_00137at 148.606 kb on + strand, within MIT1002_00137at 148.607 kb on - strand, within MIT1002_00137at 148.614 kb on - strand, within MIT1002_00137at 148.619 kb on - strand, within MIT1002_00137at 148.658 kb on - strand, within MIT1002_00137at 148.658 kb on - strand, within MIT1002_00137at 148.668 kb on - strand, within MIT1002_00137at 148.844 kb on - strand, within MIT1002_00137at 148.850 kb on + strand, within MIT1002_00137at 148.858 kb on - strand, within MIT1002_00137at 148.872 kb on + strand, within MIT1002_00137at 148.880 kb on - strand, within MIT1002_00137at 148.880 kb on - strand, within MIT1002_00137at 148.995 kb on - strand, within MIT1002_00137at 149.014 kb on + strand, within MIT1002_00137at 149.170 kb on + strand, within MIT1002_00137at 149.178 kb on - strand, within MIT1002_00137at 149.178 kb on - strand, within MIT1002_00137at 149.206 kb on + strand, within MIT1002_00137at 149.243 kb on + strand, within MIT1002_00137at 149.314 kb on + strand, within MIT1002_00137at 149.314 kb on + strand, within MIT1002_00137at 149.322 kb on - strand, within MIT1002_00137at 149.377 kb on - strand, within MIT1002_00137at 149.392 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.448 kb on + strand, within MIT1002_00137at 149.478 kb on + strand, within MIT1002_00137at 149.486 kb on - strand, within MIT1002_00137at 149.516 kb on + strand, within MIT1002_00137at 149.525 kb on - strand, within MIT1002_00137at 149.571 kb on + strand, within MIT1002_00137at 149.571 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.705 kb on - strand, within MIT1002_00137at 149.705 kb on - strand, within MIT1002_00137at 149.724 kb on - strand, within MIT1002_00137at 149.791 kb on + strand, within MIT1002_00137at 149.794 kb on - strand, within MIT1002_00137at 149.796 kb on - strand, within MIT1002_00137at 149.871 kb on + strand, within MIT1002_00137at 149.914 kb on - strand, within MIT1002_00137at 149.981 kb on + strandat 149.982 kb on - strandat 150.001 kb on - strandat 150.136 kb on + strandat 150.139 kb on - strandat 150.156 kb on - strandat 150.160 kb on + strandat 150.219 kb on - strand, within MIT1002_00138at 150.234 kb on + strand, within MIT1002_00138at 150.242 kb on - strand, within MIT1002_00138at 150.266 kb on - strand, within MIT1002_00138at 150.301 kb on + strand, within MIT1002_00138at 150.309 kb on - strand, within MIT1002_00138at 150.422 kb on - strand, within MIT1002_00138at 150.447 kb on - strand, within MIT1002_00138at 150.447 kb on - strand, within MIT1002_00138at 150.477 kb on - strand, within MIT1002_00138at 150.521 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.531 kb on - strand, within MIT1002_00138at 150.534 kb on - strand, within MIT1002_00138at 150.546 kb on - strand, within MIT1002_00138at 150.634 kb on + strand, within MIT1002_00138at 150.706 kb on - strand, within MIT1002_00138at 150.721 kb on + strand, within MIT1002_00138at 150.745 kb on + strand, within MIT1002_00138at 150.785 kb on - strand, within MIT1002_00138at 150.785 kb on - strand, within MIT1002_00138at 150.792 kb on - strand, within MIT1002_00138at 150.805 kb on + strand, within MIT1002_00138at 150.823 kb on - strand, within MIT1002_00138at 150.824 kb on - strand, within MIT1002_00138at 150.937 kb on - strand, within MIT1002_00138at 150.943 kb on - strand, within MIT1002_00138at 150.963 kb on - strand, within MIT1002_00138at 150.963 kb on - strand, within MIT1002_00138at 150.974 kb on + strand, within MIT1002_00138at 151.023 kb on - strandat 151.033 kb on + strandat 151.033 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.049 kb on - strandat 151.049 kb on - strandat 151.049 kb on - strandat 151.056 kb on - strandat 151.072 kb on + strandat 151.096 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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147,302 + -2.3
147,352 + +0.0
147,360 - +1.5
147,400 + +1.1
147,400 + -1.4
147,439 - -0.0
147,439 - -3.0
147,496 - -0.8
147,579 - -1.9
147,688 + +1.0
147,690 + -1.2
147,739 - MIT1002_00136 0.18 +2.0
147,768 + MIT1002_00136 0.23 -0.7
147,776 - MIT1002_00136 0.25 +0.5
147,786 - MIT1002_00136 0.27 -0.1
147,786 - MIT1002_00136 0.27 -2.7
147,809 + MIT1002_00136 0.32 -2.0
147,837 + MIT1002_00136 0.37 +1.8
147,847 + MIT1002_00136 0.39 +0.2
147,865 + MIT1002_00136 0.43 +1.1
147,865 + MIT1002_00136 0.43 -0.4
147,865 + MIT1002_00136 0.43 +0.3
147,867 + MIT1002_00136 0.43 -0.7
147,873 - MIT1002_00136 0.45 +0.6
147,911 + MIT1002_00136 0.52 -0.9
147,919 + MIT1002_00136 0.54 -1.3
147,961 + MIT1002_00136 0.62 +0.4
147,979 + MIT1002_00136 0.66 -2.0
148,000 + MIT1002_00136 0.70 +2.3
148,050 + MIT1002_00136 0.80 +1.4
148,163 + -3.4
148,163 + -3.0
148,171 - -0.8
148,171 - -3.0
148,171 - +0.3
148,171 - -0.2
148,248 - -3.2
148,248 - -1.7
148,248 - -0.7
148,248 - +0.9
148,286 + -2.1
148,293 + +0.9
148,341 + -0.9
148,356 + +0.8
148,422 - -1.8
148,522 + MIT1002_00137 0.14 -2.8
148,532 + MIT1002_00137 0.15 -0.4
148,532 + MIT1002_00137 0.15 -3.2
148,532 + MIT1002_00137 0.15 +0.3
148,532 + MIT1002_00137 0.15 -0.8
148,535 - MIT1002_00137 0.15 -1.4
148,540 - MIT1002_00137 0.15 -0.7
148,540 - MIT1002_00137 0.15 -1.2
148,540 - MIT1002_00137 0.15 -0.4
148,606 + MIT1002_00137 0.19 -2.5
148,606 + MIT1002_00137 0.19 -1.1
148,607 - MIT1002_00137 0.19 -0.2
148,614 - MIT1002_00137 0.19 -3.6
148,619 - MIT1002_00137 0.19 -1.4
148,658 - MIT1002_00137 0.21 -0.1
148,658 - MIT1002_00137 0.21 -0.5
148,668 - MIT1002_00137 0.22 -0.1
148,844 - MIT1002_00137 0.32 -0.8
148,850 + MIT1002_00137 0.32 +0.1
148,858 - MIT1002_00137 0.32 -1.3
148,872 + MIT1002_00137 0.33 -0.8
148,880 - MIT1002_00137 0.34 -1.3
148,880 - MIT1002_00137 0.34 -0.0
148,995 - MIT1002_00137 0.40 -1.8
149,014 + MIT1002_00137 0.41 -2.7
149,170 + MIT1002_00137 0.49 -3.3
149,178 - MIT1002_00137 0.50 -1.7
149,178 - MIT1002_00137 0.50 -0.1
149,206 + MIT1002_00137 0.51 -1.9
149,243 + MIT1002_00137 0.53 -1.5
149,314 + MIT1002_00137 0.57 +1.5
149,314 + MIT1002_00137 0.57 -0.1
149,322 - MIT1002_00137 0.58 -3.3
149,377 - MIT1002_00137 0.61 -1.1
149,392 + MIT1002_00137 0.61 -2.8
149,399 + MIT1002_00137 0.62 -2.4
149,399 + MIT1002_00137 0.62 -0.6
149,399 + MIT1002_00137 0.62 -0.3
149,448 + MIT1002_00137 0.64 -1.3
149,478 + MIT1002_00137 0.66 -1.6
149,486 - MIT1002_00137 0.66 -2.7
149,516 + MIT1002_00137 0.68 -0.3
149,525 - MIT1002_00137 0.69 -0.2
149,571 + MIT1002_00137 0.71 +0.2
149,571 + MIT1002_00137 0.71 -0.9
149,697 + MIT1002_00137 0.78 -2.6
149,697 + MIT1002_00137 0.78 -2.7
149,697 + MIT1002_00137 0.78 -1.2
149,697 + MIT1002_00137 0.78 -1.9
149,697 + MIT1002_00137 0.78 -1.4
149,705 - MIT1002_00137 0.78 -0.7
149,705 - MIT1002_00137 0.78 -0.7
149,724 - MIT1002_00137 0.79 -2.6
149,791 + MIT1002_00137 0.83 -1.3
149,794 - MIT1002_00137 0.83 -2.5
149,796 - MIT1002_00137 0.83 +0.3
149,871 + MIT1002_00137 0.87 -1.1
149,914 - MIT1002_00137 0.90 +1.7
149,981 + -0.1
149,982 - -1.0
150,001 - -2.0
150,136 + -1.9
150,139 - +0.4
150,156 - -3.3
150,160 + +2.4
150,219 - MIT1002_00138 0.12 +0.9
150,234 + MIT1002_00138 0.14 -2.6
150,242 - MIT1002_00138 0.14 +0.5
150,266 - MIT1002_00138 0.17 -1.4
150,301 + MIT1002_00138 0.20 -0.7
150,309 - MIT1002_00138 0.21 -2.7
150,422 - MIT1002_00138 0.33 -0.4
150,447 - MIT1002_00138 0.35 +1.1
150,447 - MIT1002_00138 0.35 +2.4
150,477 - MIT1002_00138 0.38 -1.2
150,521 + MIT1002_00138 0.43 +0.0
150,526 + MIT1002_00138 0.43 +0.9
150,526 + MIT1002_00138 0.43 +1.3
150,526 + MIT1002_00138 0.43 -0.5
150,526 + MIT1002_00138 0.43 +0.2
150,531 - MIT1002_00138 0.44 +1.5
150,534 - MIT1002_00138 0.44 -1.7
150,546 - MIT1002_00138 0.45 -0.1
150,634 + MIT1002_00138 0.54 +0.9
150,706 - MIT1002_00138 0.62 +1.5
150,721 + MIT1002_00138 0.63 +0.6
150,745 + MIT1002_00138 0.66 -2.7
150,785 - MIT1002_00138 0.70 -1.8
150,785 - MIT1002_00138 0.70 -0.5
150,792 - MIT1002_00138 0.71 +0.2
150,805 + MIT1002_00138 0.72 -4.5
150,823 - MIT1002_00138 0.74 +1.4
150,824 - MIT1002_00138 0.74 -0.3
150,937 - MIT1002_00138 0.85 -0.1
150,943 - MIT1002_00138 0.86 +0.3
150,963 - MIT1002_00138 0.88 -1.7
150,963 - MIT1002_00138 0.88 +0.1
150,974 + MIT1002_00138 0.89 -3.5
151,023 - -0.1
151,033 + +0.4
151,033 + +0.5
151,048 + -0.6
151,048 + +1.6
151,048 + -0.4
151,048 + +1.0
151,049 - +0.1
151,049 - +0.1
151,049 - -1.0
151,056 - +1.7
151,072 + +0.1
151,096 + +0.6

Or see this region's nucleotide sequence