Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00083 and MIT1002_00084 are separated by 280 nucleotides MIT1002_00084 and MIT1002_00085 are separated by 167 nucleotides MIT1002_00085 and MIT1002_00086 are separated by 74 nucleotides
MIT1002_00083: MIT1002_00083 - putative methyltransferase, at 88,859 to 89,431
_00083
MIT1002_00084: MIT1002_00084 - Ferripyoverdine receptor precursor, at 89,712 to 91,805
_00084
MIT1002_00085: MIT1002_00085 - hypothetical protein, at 91,973 to 92,494
_00085
MIT1002_00086: MIT1002_00086 - (R)-benzylsuccinyl-CoA dehydrogenase, at 92,569 to 93,789
_00086
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.879 kb on + strand at 88.889 kb on + strand at 88.922 kb on + strand, within MIT1002_00083 at 88.955 kb on - strand, within MIT1002_00083 at 88.955 kb on - strand, within MIT1002_00083 at 89.014 kb on + strand, within MIT1002_00083 at 89.022 kb on - strand, within MIT1002_00083 at 89.037 kb on - strand, within MIT1002_00083 at 89.088 kb on + strand, within MIT1002_00083 at 89.115 kb on + strand, within MIT1002_00083 at 89.125 kb on + strand, within MIT1002_00083 at 89.205 kb on - strand, within MIT1002_00083 at 89.249 kb on - strand, within MIT1002_00083 at 89.249 kb on - strand, within MIT1002_00083 at 89.249 kb on - strand, within MIT1002_00083 at 89.318 kb on - strand, within MIT1002_00083 at 89.347 kb on + strand, within MIT1002_00083 at 89.417 kb on + strand at 89.459 kb on + strand at 89.478 kb on + strand at 89.507 kb on - strand at 89.554 kb on - strand at 89.554 kb on - strand at 89.660 kb on - strand at 89.675 kb on + strand at 89.675 kb on + strand at 89.711 kb on - strand at 89.791 kb on - strand at 89.799 kb on - strand at 89.849 kb on - strand at 89.879 kb on - strand at 89.962 kb on - strand, within MIT1002_00084 at 89.989 kb on + strand, within MIT1002_00084 at 89.997 kb on - strand, within MIT1002_00084 at 90.025 kb on - strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.064 kb on + strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.072 kb on - strand, within MIT1002_00084 at 90.088 kb on - strand, within MIT1002_00084 at 90.090 kb on + strand, within MIT1002_00084 at 90.108 kb on - strand, within MIT1002_00084 at 90.111 kb on + strand, within MIT1002_00084 at 90.111 kb on + strand, within MIT1002_00084 at 90.119 kb on - strand, within MIT1002_00084 at 90.166 kb on - strand, within MIT1002_00084 at 90.171 kb on + strand, within MIT1002_00084 at 90.173 kb on - strand, within MIT1002_00084 at 90.260 kb on + strand, within MIT1002_00084 at 90.268 kb on - strand, within MIT1002_00084 at 90.268 kb on - strand, within MIT1002_00084 at 90.268 kb on - strand, within MIT1002_00084 at 90.283 kb on + strand, within MIT1002_00084 at 90.293 kb on + strand, within MIT1002_00084 at 90.296 kb on - strand, within MIT1002_00084 at 90.308 kb on - strand, within MIT1002_00084 at 90.335 kb on - strand, within MIT1002_00084 at 90.362 kb on - strand, within MIT1002_00084 at 90.426 kb on + strand, within MIT1002_00084 at 90.492 kb on - strand, within MIT1002_00084 at 90.497 kb on - strand, within MIT1002_00084 at 90.568 kb on - strand, within MIT1002_00084 at 90.575 kb on - strand, within MIT1002_00084 at 90.624 kb on + strand, within MIT1002_00084 at 90.649 kb on - strand, within MIT1002_00084 at 90.679 kb on - strand, within MIT1002_00084 at 90.713 kb on - strand, within MIT1002_00084 at 90.724 kb on + strand, within MIT1002_00084 at 90.769 kb on + strand, within MIT1002_00084 at 90.874 kb on + strand, within MIT1002_00084 at 90.895 kb on + strand, within MIT1002_00084 at 90.907 kb on + strand, within MIT1002_00084 at 90.911 kb on + strand, within MIT1002_00084 at 90.919 kb on + strand, within MIT1002_00084 at 90.937 kb on + strand, within MIT1002_00084 at 90.940 kb on - strand, within MIT1002_00084 at 90.946 kb on + strand, within MIT1002_00084 at 90.954 kb on - strand, within MIT1002_00084 at 90.954 kb on - strand, within MIT1002_00084 at 90.954 kb on - strand, within MIT1002_00084 at 91.034 kb on + strand, within MIT1002_00084 at 91.120 kb on + strand, within MIT1002_00084 at 91.167 kb on + strand, within MIT1002_00084 at 91.177 kb on + strand, within MIT1002_00084 at 91.177 kb on + strand, within MIT1002_00084 at 91.180 kb on - strand, within MIT1002_00084 at 91.185 kb on - strand, within MIT1002_00084 at 91.185 kb on - strand, within MIT1002_00084 at 91.185 kb on - strand, within MIT1002_00084 at 91.195 kb on - strand, within MIT1002_00084 at 91.209 kb on + strand, within MIT1002_00084 at 91.213 kb on - strand, within MIT1002_00084 at 91.213 kb on - strand, within MIT1002_00084 at 91.225 kb on + strand, within MIT1002_00084 at 91.225 kb on + strand, within MIT1002_00084 at 91.242 kb on + strand, within MIT1002_00084 at 91.242 kb on + strand, within MIT1002_00084 at 91.262 kb on + strand, within MIT1002_00084 at 91.269 kb on + strand, within MIT1002_00084 at 91.277 kb on - strand, within MIT1002_00084 at 91.363 kb on - strand, within MIT1002_00084 at 91.373 kb on - strand, within MIT1002_00084 at 91.466 kb on - strand, within MIT1002_00084 at 91.473 kb on + strand, within MIT1002_00084 at 91.498 kb on + strand, within MIT1002_00084 at 91.503 kb on + strand, within MIT1002_00084 at 91.505 kb on + strand, within MIT1002_00084 at 91.505 kb on + strand, within MIT1002_00084 at 91.505 kb on + strand, within MIT1002_00084 at 91.513 kb on - strand, within MIT1002_00084 at 91.531 kb on + strand, within MIT1002_00084 at 91.541 kb on + strand, within MIT1002_00084 at 91.590 kb on + strand, within MIT1002_00084 at 91.596 kb on - strand at 91.619 kb on + strand at 91.632 kb on - strand at 91.632 kb on - strand at 91.634 kb on - strand at 91.634 kb on - strand at 91.752 kb on + strand at 91.779 kb on + strand at 91.779 kb on + strand at 91.950 kb on - strand at 91.982 kb on + strand at 92.007 kb on + strand at 92.015 kb on - strand at 92.021 kb on + strand at 92.021 kb on + strand at 92.021 kb on + strand at 92.060 kb on + strand, within MIT1002_00085 at 92.128 kb on - strand, within MIT1002_00085 at 92.165 kb on + strand, within MIT1002_00085 at 92.165 kb on + strand, within MIT1002_00085 at 92.183 kb on - strand, within MIT1002_00085 at 92.265 kb on + strand, within MIT1002_00085 at 92.309 kb on - strand, within MIT1002_00085 at 92.376 kb on - strand, within MIT1002_00085 at 92.383 kb on - strand, within MIT1002_00085 at 92.426 kb on - strand, within MIT1002_00085 at 92.454 kb on + strand at 92.462 kb on - strand at 92.462 kb on - strand at 92.462 kb on - strand at 92.462 kb on - strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.499 kb on + strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.507 kb on - strand at 92.512 kb on + strand at 92.512 kb on + strand at 92.512 kb on + strand at 92.512 kb on + strand at 92.520 kb on - strand at 92.520 kb on - strand at 92.520 kb on - strand at 92.520 kb on - strand at 92.624 kb on - strand at 92.626 kb on + strand at 92.626 kb on + strand at 92.717 kb on + strand, within MIT1002_00086
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1 remove 88,879 + -0.3 88,889 + +0.0 88,922 + MIT1002_00083 0.11 +1.2 88,955 - MIT1002_00083 0.17 -1.2 88,955 - MIT1002_00083 0.17 +1.3 89,014 + MIT1002_00083 0.27 +1.2 89,022 - MIT1002_00083 0.28 +0.0 89,037 - MIT1002_00083 0.31 -0.1 89,088 + MIT1002_00083 0.40 -2.0 89,115 + MIT1002_00083 0.45 -1.0 89,125 + MIT1002_00083 0.46 -0.7 89,205 - MIT1002_00083 0.60 +0.4 89,249 - MIT1002_00083 0.68 -0.7 89,249 - MIT1002_00083 0.68 +1.2 89,249 - MIT1002_00083 0.68 -1.1 89,318 - MIT1002_00083 0.80 +0.5 89,347 + MIT1002_00083 0.85 +0.0 89,417 + +0.8 89,459 + -2.4 89,478 + -1.8 89,507 - -2.3 89,554 - +0.1 89,554 - -3.6 89,660 - +0.7 89,675 + +0.0 89,675 + -0.7 89,711 - +1.1 89,791 - -1.7 89,799 - +0.1 89,849 - -3.1 89,879 - +0.2 89,962 - MIT1002_00084 0.12 +0.1 89,989 + MIT1002_00084 0.13 +0.6 89,997 - MIT1002_00084 0.14 -1.5 90,025 - MIT1002_00084 0.15 -1.3 90,064 + MIT1002_00084 0.17 +0.4 90,064 + MIT1002_00084 0.17 -0.1 90,064 + MIT1002_00084 0.17 +0.2 90,064 + MIT1002_00084 0.17 -0.5 90,064 + MIT1002_00084 0.17 +1.0 90,064 + MIT1002_00084 0.17 +1.6 90,072 - MIT1002_00084 0.17 +1.6 90,072 - MIT1002_00084 0.17 +0.4 90,072 - MIT1002_00084 0.17 +0.3 90,072 - MIT1002_00084 0.17 +0.3 90,072 - MIT1002_00084 0.17 -0.2 90,072 - MIT1002_00084 0.17 -0.6 90,072 - MIT1002_00084 0.17 +0.7 90,072 - MIT1002_00084 0.17 +0.4 90,072 - MIT1002_00084 0.17 -0.4 90,088 - MIT1002_00084 0.18 +1.0 90,090 + MIT1002_00084 0.18 -2.1 90,108 - MIT1002_00084 0.19 -0.8 90,111 + MIT1002_00084 0.19 +0.4 90,111 + MIT1002_00084 0.19 +0.2 90,119 - MIT1002_00084 0.19 -2.1 90,166 - MIT1002_00084 0.22 +0.9 90,171 + MIT1002_00084 0.22 -1.6 90,173 - MIT1002_00084 0.22 +0.2 90,260 + MIT1002_00084 0.26 -1.5 90,268 - MIT1002_00084 0.27 -0.3 90,268 - MIT1002_00084 0.27 -2.2 90,268 - MIT1002_00084 0.27 +1.6 90,283 + MIT1002_00084 0.27 +0.4 90,293 + MIT1002_00084 0.28 -0.6 90,296 - MIT1002_00084 0.28 +1.0 90,308 - MIT1002_00084 0.28 -0.8 90,335 - MIT1002_00084 0.30 +0.5 90,362 - MIT1002_00084 0.31 -0.3 90,426 + MIT1002_00084 0.34 -0.7 90,492 - MIT1002_00084 0.37 +0.2 90,497 - MIT1002_00084 0.37 +1.1 90,568 - MIT1002_00084 0.41 +1.5 90,575 - MIT1002_00084 0.41 +1.3 90,624 + MIT1002_00084 0.44 -0.9 90,649 - MIT1002_00084 0.45 -3.0 90,679 - MIT1002_00084 0.46 +1.1 90,713 - MIT1002_00084 0.48 +0.9 90,724 + MIT1002_00084 0.48 -0.3 90,769 + MIT1002_00084 0.50 +0.1 90,874 + MIT1002_00084 0.55 -0.5 90,895 + MIT1002_00084 0.56 -0.1 90,907 + MIT1002_00084 0.57 +1.8 90,911 + MIT1002_00084 0.57 -0.2 90,919 + MIT1002_00084 0.58 +1.0 90,937 + MIT1002_00084 0.59 +0.2 90,940 - MIT1002_00084 0.59 +0.2 90,946 + MIT1002_00084 0.59 +0.3 90,954 - MIT1002_00084 0.59 +0.3 90,954 - MIT1002_00084 0.59 +0.1 90,954 - MIT1002_00084 0.59 -2.3 91,034 + MIT1002_00084 0.63 -1.2 91,120 + MIT1002_00084 0.67 -3.1 91,167 + MIT1002_00084 0.69 -2.4 91,177 + MIT1002_00084 0.70 -3.5 91,177 + MIT1002_00084 0.70 +2.4 91,180 - MIT1002_00084 0.70 -0.1 91,185 - MIT1002_00084 0.70 +0.2 91,185 - MIT1002_00084 0.70 +2.5 91,185 - MIT1002_00084 0.70 +0.9 91,195 - MIT1002_00084 0.71 +0.7 91,209 + MIT1002_00084 0.71 +0.0 91,213 - MIT1002_00084 0.72 +0.2 91,213 - MIT1002_00084 0.72 +2.0 91,225 + MIT1002_00084 0.72 +0.3 91,225 + MIT1002_00084 0.72 +2.1 91,242 + MIT1002_00084 0.73 -1.7 91,242 + MIT1002_00084 0.73 -0.9 91,262 + MIT1002_00084 0.74 +0.7 91,269 + MIT1002_00084 0.74 +0.3 91,277 - MIT1002_00084 0.75 +0.3 91,363 - MIT1002_00084 0.79 +1.8 91,373 - MIT1002_00084 0.79 -0.9 91,466 - MIT1002_00084 0.84 -2.5 91,473 + MIT1002_00084 0.84 -0.6 91,498 + MIT1002_00084 0.85 +1.2 91,503 + MIT1002_00084 0.86 -0.5 91,505 + MIT1002_00084 0.86 +0.1 91,505 + MIT1002_00084 0.86 +0.6 91,505 + MIT1002_00084 0.86 -1.8 91,513 - MIT1002_00084 0.86 +0.5 91,531 + MIT1002_00084 0.87 +1.8 91,541 + MIT1002_00084 0.87 +1.1 91,590 + MIT1002_00084 0.90 +0.6 91,596 - +0.2 91,619 + +1.1 91,632 - -1.1 91,632 - -1.3 91,634 - +0.2 91,634 - -2.8 91,752 + +1.1 91,779 + +1.8 91,779 + -3.1 91,950 - -3.3 91,982 + +2.4 92,007 + -0.0 92,015 - -1.4 92,021 + +0.4 92,021 + +0.8 92,021 + -2.6 92,060 + MIT1002_00085 0.17 -0.4 92,128 - MIT1002_00085 0.30 +0.3 92,165 + MIT1002_00085 0.37 +1.2 92,165 + MIT1002_00085 0.37 -0.7 92,183 - MIT1002_00085 0.40 +1.3 92,265 + MIT1002_00085 0.56 -3.1 92,309 - MIT1002_00085 0.64 -1.6 92,376 - MIT1002_00085 0.77 -0.6 92,383 - MIT1002_00085 0.79 +0.1 92,426 - MIT1002_00085 0.87 -2.5 92,454 + -1.1 92,462 - +1.4 92,462 - -0.1 92,462 - -1.1 92,462 - +2.4 92,499 + +0.5 92,499 + -1.7 92,499 + +0.8 92,499 + +1.1 92,499 + -1.3 92,499 + +0.6 92,499 + -0.9 92,499 + -0.2 92,499 + +0.7 92,507 - +0.4 92,507 - +0.1 92,507 - +0.4 92,507 - +0.5 92,507 - -0.4 92,507 - -1.7 92,507 - +0.6 92,512 + +0.1 92,512 + -1.3 92,512 + +0.1 92,512 + -0.9 92,520 - +0.2 92,520 - -0.7 92,520 - +0.6 92,520 - -1.6 92,624 - -0.9 92,626 + +1.1 92,626 + -0.4 92,717 + MIT1002_00086 0.12 -0.4
Or see this region's nucleotide sequence