Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00031

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00029 and MIT1002_00030 overlap by 4 nucleotidesMIT1002_00030 and MIT1002_00031 are separated by 214 nucleotidesMIT1002_00031 and MIT1002_00032 are separated by 373 nucleotides MIT1002_00029: MIT1002_00029 - Shikimate dehydrogenase, at 31,478 to 32,254 _00029 MIT1002_00030: MIT1002_00030 - carnitine operon protein CaiE, at 32,251 to 32,793 _00030 MIT1002_00031: MIT1002_00031 - UDP-N-acetylglucosamine 2-epimerase, at 33,008 to 34,048 _00031 MIT1002_00032: MIT1002_00032 - 16S ribosomal RNA, at 34,422 to 35,942 _00032 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 32.340 kb on + strand, within MIT1002_00030at 32.403 kb on + strand, within MIT1002_00030at 32.430 kb on - strand, within MIT1002_00030at 32.511 kb on + strand, within MIT1002_00030at 32.511 kb on + strand, within MIT1002_00030at 32.511 kb on + strand, within MIT1002_00030at 32.514 kb on - strand, within MIT1002_00030at 32.518 kb on + strand, within MIT1002_00030at 32.519 kb on - strand, within MIT1002_00030at 32.519 kb on - strand, within MIT1002_00030at 32.524 kb on - strand, within MIT1002_00030at 32.524 kb on - strand, within MIT1002_00030at 32.526 kb on - strand, within MIT1002_00030at 32.526 kb on - strand, within MIT1002_00030at 32.587 kb on - strand, within MIT1002_00030at 32.593 kb on + strand, within MIT1002_00030at 32.603 kb on - strand, within MIT1002_00030at 32.802 kb on + strandat 32.802 kb on + strandat 32.810 kb on - strandat 32.875 kb on + strandat 32.895 kb on + strandat 32.896 kb on - strandat 32.915 kb on + strandat 32.923 kb on - strandat 33.005 kb on + strandat 33.085 kb on + strandat 33.085 kb on + strandat 33.085 kb on + strandat 33.093 kb on - strandat 33.093 kb on - strandat 33.093 kb on - strandat 33.093 kb on - strandat 33.093 kb on - strandat 33.126 kb on + strand, within MIT1002_00031at 33.134 kb on + strand, within MIT1002_00031at 33.167 kb on + strand, within MIT1002_00031at 33.182 kb on + strand, within MIT1002_00031at 33.191 kb on + strand, within MIT1002_00031at 33.240 kb on + strand, within MIT1002_00031at 33.240 kb on + strand, within MIT1002_00031at 33.240 kb on + strand, within MIT1002_00031at 33.247 kb on - strand, within MIT1002_00031at 33.247 kb on - strand, within MIT1002_00031at 33.248 kb on - strand, within MIT1002_00031at 33.248 kb on - strand, within MIT1002_00031at 33.292 kb on + strand, within MIT1002_00031at 33.295 kb on - strand, within MIT1002_00031at 33.335 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.340 kb on + strand, within MIT1002_00031at 33.342 kb on + strand, within MIT1002_00031at 33.343 kb on - strand, within MIT1002_00031at 33.343 kb on - strand, within MIT1002_00031at 33.345 kb on + strand, within MIT1002_00031at 33.347 kb on + strand, within MIT1002_00031at 33.348 kb on - strand, within MIT1002_00031at 33.358 kb on + strand, within MIT1002_00031at 33.372 kb on + strand, within MIT1002_00031at 33.372 kb on + strand, within MIT1002_00031at 33.412 kb on + strand, within MIT1002_00031at 33.420 kb on - strand, within MIT1002_00031at 33.426 kb on + strand, within MIT1002_00031at 33.430 kb on - strand, within MIT1002_00031at 33.434 kb on - strand, within MIT1002_00031at 33.509 kb on + strand, within MIT1002_00031at 33.509 kb on + strand, within MIT1002_00031at 33.517 kb on - strand, within MIT1002_00031at 33.530 kb on - strand, within MIT1002_00031at 33.616 kb on + strand, within MIT1002_00031at 33.622 kb on - strand, within MIT1002_00031at 33.622 kb on - strand, within MIT1002_00031at 33.704 kb on + strand, within MIT1002_00031at 33.904 kb on + strand, within MIT1002_00031at 33.955 kb on + strandat 33.955 kb on + strandat 33.967 kb on + strandat 34.017 kb on + strandat 34.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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32,340 + MIT1002_00030 0.16 +0.4
32,403 + MIT1002_00030 0.28 -0.1
32,430 - MIT1002_00030 0.33 -1.8
32,511 + MIT1002_00030 0.48 +1.1
32,511 + MIT1002_00030 0.48 +2.1
32,511 + MIT1002_00030 0.48 -3.1
32,514 - MIT1002_00030 0.48 +0.2
32,518 + MIT1002_00030 0.49 -0.5
32,519 - MIT1002_00030 0.49 -0.6
32,519 - MIT1002_00030 0.49 -0.0
32,524 - MIT1002_00030 0.50 -0.5
32,524 - MIT1002_00030 0.50 -0.2
32,526 - MIT1002_00030 0.51 -0.5
32,526 - MIT1002_00030 0.51 +0.5
32,587 - MIT1002_00030 0.62 +0.1
32,593 + MIT1002_00030 0.63 -0.3
32,603 - MIT1002_00030 0.65 +0.2
32,802 + +0.4
32,802 + +0.7
32,810 - +0.1
32,875 + +0.6
32,895 + +0.6
32,896 - -0.4
32,915 + +0.1
32,923 - -0.1
33,005 + -1.0
33,085 + +0.2
33,085 + +0.9
33,085 + +0.2
33,093 - +0.1
33,093 - +0.2
33,093 - -1.9
33,093 - -2.1
33,093 - -2.0
33,126 + MIT1002_00031 0.11 -0.3
33,134 + MIT1002_00031 0.12 -1.5
33,167 + MIT1002_00031 0.15 -1.7
33,182 + MIT1002_00031 0.17 -0.1
33,191 + MIT1002_00031 0.18 -0.4
33,240 + MIT1002_00031 0.22 +0.6
33,240 + MIT1002_00031 0.22 -1.5
33,240 + MIT1002_00031 0.22 +2.0
33,247 - MIT1002_00031 0.23 +1.3
33,247 - MIT1002_00031 0.23 -1.4
33,248 - MIT1002_00031 0.23 -1.0
33,248 - MIT1002_00031 0.23 +0.4
33,292 + MIT1002_00031 0.27 -1.1
33,295 - MIT1002_00031 0.28 -1.7
33,335 + MIT1002_00031 0.31 -1.5
33,340 + MIT1002_00031 0.32 +0.8
33,340 + MIT1002_00031 0.32 -3.0
33,340 + MIT1002_00031 0.32 -3.0
33,340 + MIT1002_00031 0.32 -4.4
33,340 + MIT1002_00031 0.32 -1.3
33,340 + MIT1002_00031 0.32 -2.0
33,342 + MIT1002_00031 0.32 +0.6
33,343 - MIT1002_00031 0.32 +0.7
33,343 - MIT1002_00031 0.32 -1.6
33,345 + MIT1002_00031 0.32 +0.3
33,347 + MIT1002_00031 0.33 -0.0
33,348 - MIT1002_00031 0.33 -0.3
33,358 + MIT1002_00031 0.34 -1.4
33,372 + MIT1002_00031 0.35 +1.6
33,372 + MIT1002_00031 0.35 -0.8
33,412 + MIT1002_00031 0.39 -0.9
33,420 - MIT1002_00031 0.40 -2.2
33,426 + MIT1002_00031 0.40 -1.0
33,430 - MIT1002_00031 0.41 -0.7
33,434 - MIT1002_00031 0.41 -2.8
33,509 + MIT1002_00031 0.48 -0.3
33,509 + MIT1002_00031 0.48 +1.3
33,517 - MIT1002_00031 0.49 +1.4
33,530 - MIT1002_00031 0.50 -1.8
33,616 + MIT1002_00031 0.58 +1.6
33,622 - MIT1002_00031 0.59 -0.5
33,622 - MIT1002_00031 0.59 -0.2
33,704 + MIT1002_00031 0.67 +0.7
33,904 + MIT1002_00031 0.86 +0.1
33,955 + -0.7
33,955 + +0.4
33,967 + -3.1
34,017 + -0.8
34,061 - +2.4

Or see this region's nucleotide sequence