Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00017

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00016 and MIT1002_00017 are separated by 115 nucleotidesMIT1002_00017 and MIT1002_00018 are separated by 64 nucleotides MIT1002_00016: MIT1002_00016 - Trk system potassium uptake protein TrkH, at 19,020 to 20,471 _00016 MIT1002_00017: MIT1002_00017 - Trk system potassium uptake protein TrkA, at 20,587 to 21,966 _00017 MIT1002_00018: MIT1002_00018 - Ribosomal RNA small subunit methyltransferase B, at 22,031 to 23,350 _00018 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 20.565 kb on + strandat 20.573 kb on - strandat 22.004 kb on - strandat 22.014 kb on - strandat 22.022 kb on - strandat 22.032 kb on - strandat 22.145 kb on - strandat 22.150 kb on + strandat 22.218 kb on + strand, within MIT1002_00018at 22.226 kb on - strand, within MIT1002_00018at 22.226 kb on - strand, within MIT1002_00018at 22.226 kb on - strand, within MIT1002_00018at 22.239 kb on + strand, within MIT1002_00018at 22.247 kb on - strand, within MIT1002_00018at 22.285 kb on + strand, within MIT1002_00018at 22.285 kb on + strand, within MIT1002_00018at 22.293 kb on - strand, within MIT1002_00018at 22.293 kb on - strand, within MIT1002_00018at 22.293 kb on - strand, within MIT1002_00018at 22.338 kb on + strand, within MIT1002_00018at 22.359 kb on + strand, within MIT1002_00018at 22.417 kb on - strand, within MIT1002_00018at 22.425 kb on + strand, within MIT1002_00018at 22.523 kb on + strand, within MIT1002_00018at 22.529 kb on + strand, within MIT1002_00018at 22.533 kb on - strand, within MIT1002_00018at 22.582 kb on + strand, within MIT1002_00018at 22.583 kb on + strand, within MIT1002_00018at 22.583 kb on + strand, within MIT1002_00018at 22.609 kb on - strand, within MIT1002_00018at 22.638 kb on + strand, within MIT1002_00018at 22.638 kb on + strand, within MIT1002_00018at 22.646 kb on - strand, within MIT1002_00018at 22.646 kb on - strand, within MIT1002_00018at 22.681 kb on + strand, within MIT1002_00018at 22.704 kb on + strand, within MIT1002_00018at 22.708 kb on + strand, within MIT1002_00018at 22.712 kb on - strand, within MIT1002_00018at 22.735 kb on - strand, within MIT1002_00018at 22.763 kb on - strand, within MIT1002_00018at 22.842 kb on + strand, within MIT1002_00018at 22.850 kb on - strand, within MIT1002_00018at 22.913 kb on + strand, within MIT1002_00018at 22.921 kb on - strand, within MIT1002_00018at 22.928 kb on + strand, within MIT1002_00018at 22.936 kb on - strand, within MIT1002_00018

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 1
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20,565 + +1.0
20,573 - +0.3
22,004 - +0.6
22,014 - +0.3
22,022 - +1.0
22,032 - -0.2
22,145 - +0.9
22,150 + -0.2
22,218 + MIT1002_00018 0.14 +0.3
22,226 - MIT1002_00018 0.15 -3.3
22,226 - MIT1002_00018 0.15 -0.8
22,226 - MIT1002_00018 0.15 -1.3
22,239 + MIT1002_00018 0.16 -1.7
22,247 - MIT1002_00018 0.16 -3.3
22,285 + MIT1002_00018 0.19 -1.2
22,285 + MIT1002_00018 0.19 +0.9
22,293 - MIT1002_00018 0.20 -1.7
22,293 - MIT1002_00018 0.20 +1.0
22,293 - MIT1002_00018 0.20 +0.9
22,338 + MIT1002_00018 0.23 -0.7
22,359 + MIT1002_00018 0.25 +0.6
22,417 - MIT1002_00018 0.29 -1.1
22,425 + MIT1002_00018 0.30 +1.4
22,523 + MIT1002_00018 0.37 -2.0
22,529 + MIT1002_00018 0.38 -1.5
22,533 - MIT1002_00018 0.38 -0.1
22,582 + MIT1002_00018 0.42 -0.3
22,583 + MIT1002_00018 0.42 +1.8
22,583 + MIT1002_00018 0.42 -0.1
22,609 - MIT1002_00018 0.44 +3.1
22,638 + MIT1002_00018 0.46 +0.2
22,638 + MIT1002_00018 0.46 -1.2
22,646 - MIT1002_00018 0.47 -0.5
22,646 - MIT1002_00018 0.47 -0.3
22,681 + MIT1002_00018 0.49 +0.6
22,704 + MIT1002_00018 0.51 -1.2
22,708 + MIT1002_00018 0.51 +0.6
22,712 - MIT1002_00018 0.52 +0.7
22,735 - MIT1002_00018 0.53 +0.4
22,763 - MIT1002_00018 0.55 +0.7
22,842 + MIT1002_00018 0.61 +0.6
22,850 - MIT1002_00018 0.62 +1.6
22,913 + MIT1002_00018 0.67 +0.8
22,921 - MIT1002_00018 0.67 -0.0
22,928 + MIT1002_00018 0.68 +1.2
22,936 - MIT1002_00018 0.69 -2.1

Or see this region's nucleotide sequence