Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41295

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41290 and QEN71_RS41295 are separated by 397 nucleotidesQEN71_RS41295 and QEN71_RS41300 are separated by 201 nucleotides QEN71_RS41290: QEN71_RS41290 - dihydrodipicolinate synthase family protein, at 332,909 to 333,820 _RS41290 QEN71_RS41295: QEN71_RS41295 - LysR family transcriptional regulator, at 334,218 to 335,123 _RS41295 QEN71_RS41300: QEN71_RS41300 - 3-hydroxyacyl-CoA dehydrogenase, at 335,325 to 336,278 _RS41300 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 333.557 kb on - strand, within QEN71_RS41290at 333.663 kb on + strand, within QEN71_RS41290at 333.663 kb on + strand, within QEN71_RS41290at 333.794 kb on - strandat 333.804 kb on + strandat 333.805 kb on - strandat 333.805 kb on - strandat 333.805 kb on - strandat 333.886 kb on + strandat 333.886 kb on + strandat 334.109 kb on + strandat 334.110 kb on - strandat 334.110 kb on - strandat 334.163 kb on - strandat 334.177 kb on + strandat 334.178 kb on - strandat 334.261 kb on + strandat 334.261 kb on + strandat 334.284 kb on + strandat 334.284 kb on + strandat 334.309 kb on + strand, within QEN71_RS41295at 334.309 kb on + strand, within QEN71_RS41295at 334.310 kb on - strand, within QEN71_RS41295at 334.310 kb on - strand, within QEN71_RS41295at 334.310 kb on - strand, within QEN71_RS41295at 334.310 kb on - strand, within QEN71_RS41295at 334.318 kb on + strand, within QEN71_RS41295at 334.319 kb on - strand, within QEN71_RS41295at 334.346 kb on - strand, within QEN71_RS41295at 334.346 kb on - strand, within QEN71_RS41295at 334.380 kb on + strand, within QEN71_RS41295at 334.381 kb on - strand, within QEN71_RS41295at 334.381 kb on - strand, within QEN71_RS41295at 334.381 kb on - strand, within QEN71_RS41295at 334.563 kb on - strand, within QEN71_RS41295at 334.563 kb on - strand, within QEN71_RS41295at 334.662 kb on + strand, within QEN71_RS41295at 334.662 kb on + strand, within QEN71_RS41295at 334.663 kb on - strand, within QEN71_RS41295at 334.663 kb on - strand, within QEN71_RS41295at 334.663 kb on - strand, within QEN71_RS41295at 334.811 kb on + strand, within QEN71_RS41295at 334.956 kb on + strand, within QEN71_RS41295at 334.957 kb on - strand, within QEN71_RS41295at 334.957 kb on - strand, within QEN71_RS41295at 335.024 kb on + strand, within QEN71_RS41295at 335.025 kb on - strand, within QEN71_RS41295at 335.025 kb on - strand, within QEN71_RS41295at 335.094 kb on - strandat 335.101 kb on + strandat 335.102 kb on - strandat 335.102 kb on - strandat 335.102 kb on - strandat 335.102 kb on - strandat 335.118 kb on - strandat 335.118 kb on - strandat 335.124 kb on - strandat 335.124 kb on - strandat 335.175 kb on + strandat 335.187 kb on + strandat 335.188 kb on - strandat 335.188 kb on - strandat 335.241 kb on + strandat 335.271 kb on + strandat 335.271 kb on + strandat 335.272 kb on - strandat 335.272 kb on - strandat 335.272 kb on - strandat 335.282 kb on + strandat 335.311 kb on + strandat 335.426 kb on + strand, within QEN71_RS41300at 335.443 kb on + strand, within QEN71_RS41300at 335.443 kb on + strand, within QEN71_RS41300at 335.443 kb on + strand, within QEN71_RS41300at 335.443 kb on + strand, within QEN71_RS41300at 335.444 kb on - strand, within QEN71_RS41300at 335.444 kb on - strand, within QEN71_RS41300at 335.444 kb on - strand, within QEN71_RS41300at 335.444 kb on - strand, within QEN71_RS41300at 335.473 kb on + strand, within QEN71_RS41300at 335.473 kb on + strand, within QEN71_RS41300at 335.545 kb on + strand, within QEN71_RS41300at 335.546 kb on - strand, within QEN71_RS41300at 335.557 kb on + strand, within QEN71_RS41300at 335.557 kb on + strand, within QEN71_RS41300at 335.611 kb on + strand, within QEN71_RS41300at 335.629 kb on + strand, within QEN71_RS41300at 335.629 kb on + strand, within QEN71_RS41300at 335.693 kb on - strand, within QEN71_RS41300at 335.768 kb on + strand, within QEN71_RS41300at 335.768 kb on + strand, within QEN71_RS41300at 336.093 kb on + strand, within QEN71_RS41300at 336.093 kb on + strand, within QEN71_RS41300at 336.093 kb on + strand, within QEN71_RS41300at 336.094 kb on - strand, within QEN71_RS41300at 336.094 kb on - strand, within QEN71_RS41300at 336.094 kb on - strand, within QEN71_RS41300at 336.094 kb on - strand, within QEN71_RS41300

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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333,557 - QEN71_RS41290 0.71 -0.1
333,663 + QEN71_RS41290 0.83 +1.9
333,663 + QEN71_RS41290 0.83 -1.4
333,794 - +0.5
333,804 + +0.2
333,805 - +1.8
333,805 - +1.9
333,805 - +0.1
333,886 + -0.1
333,886 + +1.5
334,109 + +0.1
334,110 - -0.0
334,110 - -0.2
334,163 - +0.2
334,177 + -0.9
334,178 - -0.1
334,261 + +0.4
334,261 + +2.2
334,284 + -1.9
334,284 + -0.1
334,309 + QEN71_RS41295 0.10 -1.3
334,309 + QEN71_RS41295 0.10 -2.3
334,310 - QEN71_RS41295 0.10 +0.7
334,310 - QEN71_RS41295 0.10 -0.6
334,310 - QEN71_RS41295 0.10 -0.3
334,310 - QEN71_RS41295 0.10 -0.1
334,318 + QEN71_RS41295 0.11 +0.8
334,319 - QEN71_RS41295 0.11 +0.1
334,346 - QEN71_RS41295 0.14 -0.3
334,346 - QEN71_RS41295 0.14 -0.7
334,380 + QEN71_RS41295 0.18 +0.6
334,381 - QEN71_RS41295 0.18 -0.1
334,381 - QEN71_RS41295 0.18 -0.2
334,381 - QEN71_RS41295 0.18 +0.9
334,563 - QEN71_RS41295 0.38 -0.2
334,563 - QEN71_RS41295 0.38 -0.4
334,662 + QEN71_RS41295 0.49 -0.4
334,662 + QEN71_RS41295 0.49 +0.8
334,663 - QEN71_RS41295 0.49 -0.3
334,663 - QEN71_RS41295 0.49 -0.3
334,663 - QEN71_RS41295 0.49 -1.3
334,811 + QEN71_RS41295 0.65 +1.1
334,956 + QEN71_RS41295 0.81 -1.3
334,957 - QEN71_RS41295 0.82 +0.5
334,957 - QEN71_RS41295 0.82 -0.1
335,024 + QEN71_RS41295 0.89 -0.8
335,025 - QEN71_RS41295 0.89 -1.5
335,025 - QEN71_RS41295 0.89 +0.6
335,094 - -0.0
335,101 + +0.6
335,102 - -0.7
335,102 - -0.1
335,102 - -1.0
335,102 - -0.3
335,118 - -0.4
335,118 - -1.7
335,124 - +0.0
335,124 - -0.1
335,175 + -0.7
335,187 + -0.9
335,188 - -0.5
335,188 - -0.1
335,241 + -0.2
335,271 + +0.2
335,271 + -0.8
335,272 - -0.6
335,272 - +2.5
335,272 - +0.0
335,282 + +0.3
335,311 + +0.4
335,426 + QEN71_RS41300 0.11 +0.3
335,443 + QEN71_RS41300 0.12 +1.3
335,443 + QEN71_RS41300 0.12 -1.6
335,443 + QEN71_RS41300 0.12 +0.5
335,443 + QEN71_RS41300 0.12 +1.7
335,444 - QEN71_RS41300 0.12 -0.1
335,444 - QEN71_RS41300 0.12 +0.4
335,444 - QEN71_RS41300 0.12 -1.4
335,444 - QEN71_RS41300 0.12 -1.1
335,473 + QEN71_RS41300 0.16 +0.3
335,473 + QEN71_RS41300 0.16 -0.6
335,545 + QEN71_RS41300 0.23 -0.1
335,546 - QEN71_RS41300 0.23 -0.0
335,557 + QEN71_RS41300 0.24 -1.4
335,557 + QEN71_RS41300 0.24 -1.0
335,611 + QEN71_RS41300 0.30 -0.7
335,629 + QEN71_RS41300 0.32 +0.8
335,629 + QEN71_RS41300 0.32 -1.3
335,693 - QEN71_RS41300 0.39 +0.3
335,768 + QEN71_RS41300 0.46 -0.3
335,768 + QEN71_RS41300 0.46 +0.3
336,093 + QEN71_RS41300 0.81 +0.3
336,093 + QEN71_RS41300 0.81 +0.3
336,093 + QEN71_RS41300 0.81 -0.5
336,094 - QEN71_RS41300 0.81 +0.6
336,094 - QEN71_RS41300 0.81 -0.0
336,094 - QEN71_RS41300 0.81 -0.1
336,094 - QEN71_RS41300 0.81 -0.7

Or see this region's nucleotide sequence