Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41285 and QEN71_RS41290 are separated by 27 nucleotides QEN71_RS41290 and QEN71_RS41295 are separated by 397 nucleotides
QEN71_RS41285: QEN71_RS41285 - aldehyde dehydrogenase, at 331,382 to 332,881
_RS41285
QEN71_RS41290: QEN71_RS41290 - dihydrodipicolinate synthase family protein, at 332,909 to 333,820
_RS41290
QEN71_RS41295: QEN71_RS41295 - LysR family transcriptional regulator, at 334,218 to 335,123
_RS41295
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 331.939 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285 at 332.399 kb on + strand, within QEN71_RS41285 at 332.399 kb on + strand, within QEN71_RS41285 at 332.466 kb on + strand, within QEN71_RS41285 at 332.466 kb on + strand, within QEN71_RS41285 at 332.624 kb on + strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.625 kb on - strand, within QEN71_RS41285 at 332.660 kb on + strand, within QEN71_RS41285 at 332.661 kb on - strand, within QEN71_RS41285 at 332.835 kb on - strand at 332.835 kb on - strand at 332.919 kb on + strand at 332.919 kb on + strand at 332.919 kb on + strand at 332.920 kb on - strand at 333.046 kb on - strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.087 kb on + strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.088 kb on - strand, within QEN71_RS41290 at 333.095 kb on - strand, within QEN71_RS41290 at 333.160 kb on - strand, within QEN71_RS41290 at 333.557 kb on - strand, within QEN71_RS41290 at 333.663 kb on + strand, within QEN71_RS41290 at 333.663 kb on + strand, within QEN71_RS41290 at 333.794 kb on - strand at 333.804 kb on + strand at 333.805 kb on - strand at 333.805 kb on - strand at 333.805 kb on - strand at 333.886 kb on + strand at 333.886 kb on + strand at 334.109 kb on + strand at 334.110 kb on - strand at 334.110 kb on - strand at 334.163 kb on - strand at 334.177 kb on + strand at 334.178 kb on - strand at 334.261 kb on + strand at 334.261 kb on + strand at 334.284 kb on + strand at 334.284 kb on + strand at 334.309 kb on + strand, within QEN71_RS41295 at 334.309 kb on + strand, within QEN71_RS41295 at 334.310 kb on - strand, within QEN71_RS41295 at 334.310 kb on - strand, within QEN71_RS41295 at 334.310 kb on - strand, within QEN71_RS41295 at 334.310 kb on - strand, within QEN71_RS41295 at 334.318 kb on + strand, within QEN71_RS41295 at 334.319 kb on - strand, within QEN71_RS41295 at 334.346 kb on - strand, within QEN71_RS41295 at 334.346 kb on - strand, within QEN71_RS41295 at 334.380 kb on + strand, within QEN71_RS41295 at 334.381 kb on - strand, within QEN71_RS41295 at 334.381 kb on - strand, within QEN71_RS41295 at 334.381 kb on - strand, within QEN71_RS41295 at 334.563 kb on - strand, within QEN71_RS41295 at 334.563 kb on - strand, within QEN71_RS41295 at 334.662 kb on + strand, within QEN71_RS41295 at 334.662 kb on + strand, within QEN71_RS41295 at 334.663 kb on - strand, within QEN71_RS41295 at 334.663 kb on - strand, within QEN71_RS41295 at 334.663 kb on - strand, within QEN71_RS41295 at 334.811 kb on + strand, within QEN71_RS41295
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 331,939 + QEN71_RS41285 0.37 -0.4 332,179 + QEN71_RS41285 0.53 +1.5 332,179 + QEN71_RS41285 0.53 +1.4 332,180 - QEN71_RS41285 0.53 -1.7 332,180 - QEN71_RS41285 0.53 -0.2 332,399 + QEN71_RS41285 0.68 -0.3 332,399 + QEN71_RS41285 0.68 -1.6 332,466 + QEN71_RS41285 0.72 +0.0 332,466 + QEN71_RS41285 0.72 -0.1 332,624 + QEN71_RS41285 0.83 -0.1 332,625 - QEN71_RS41285 0.83 -0.6 332,625 - QEN71_RS41285 0.83 +0.2 332,625 - QEN71_RS41285 0.83 +0.6 332,660 + QEN71_RS41285 0.85 -0.4 332,661 - QEN71_RS41285 0.85 -0.7 332,835 - -0.3 332,835 - -0.7 332,919 + -0.3 332,919 + -1.7 332,919 + +0.6 332,920 - -0.1 333,046 - QEN71_RS41290 0.15 -1.0 333,087 + QEN71_RS41290 0.20 -0.4 333,087 + QEN71_RS41290 0.20 -0.1 333,087 + QEN71_RS41290 0.20 +2.5 333,087 + QEN71_RS41290 0.20 -0.5 333,087 + QEN71_RS41290 0.20 -0.7 333,088 - QEN71_RS41290 0.20 +1.0 333,088 - QEN71_RS41290 0.20 +0.6 333,088 - QEN71_RS41290 0.20 +1.3 333,088 - QEN71_RS41290 0.20 -0.4 333,095 - QEN71_RS41290 0.20 -1.1 333,160 - QEN71_RS41290 0.28 +0.1 333,557 - QEN71_RS41290 0.71 -0.1 333,663 + QEN71_RS41290 0.83 +1.9 333,663 + QEN71_RS41290 0.83 -1.4 333,794 - +0.5 333,804 + +0.2 333,805 - +1.8 333,805 - +1.9 333,805 - +0.1 333,886 + -0.1 333,886 + +1.5 334,109 + +0.1 334,110 - -0.0 334,110 - -0.2 334,163 - +0.2 334,177 + -0.9 334,178 - -0.1 334,261 + +0.4 334,261 + +2.2 334,284 + -1.9 334,284 + -0.1 334,309 + QEN71_RS41295 0.10 -1.3 334,309 + QEN71_RS41295 0.10 -2.3 334,310 - QEN71_RS41295 0.10 +0.7 334,310 - QEN71_RS41295 0.10 -0.6 334,310 - QEN71_RS41295 0.10 -0.3 334,310 - QEN71_RS41295 0.10 -0.1 334,318 + QEN71_RS41295 0.11 +0.8 334,319 - QEN71_RS41295 0.11 +0.1 334,346 - QEN71_RS41295 0.14 -0.3 334,346 - QEN71_RS41295 0.14 -0.7 334,380 + QEN71_RS41295 0.18 +0.6 334,381 - QEN71_RS41295 0.18 -0.1 334,381 - QEN71_RS41295 0.18 -0.2 334,381 - QEN71_RS41295 0.18 +0.9 334,563 - QEN71_RS41295 0.38 -0.2 334,563 - QEN71_RS41295 0.38 -0.4 334,662 + QEN71_RS41295 0.49 -0.4 334,662 + QEN71_RS41295 0.49 +0.8 334,663 - QEN71_RS41295 0.49 -0.3 334,663 - QEN71_RS41295 0.49 -0.3 334,663 - QEN71_RS41295 0.49 -1.3 334,811 + QEN71_RS41295 0.65 +1.1
Or see this region's nucleotide sequence