Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38830

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38820 and QEN71_RS38825 are separated by 23 nucleotidesQEN71_RS38825 and QEN71_RS38830 are separated by 34 nucleotidesQEN71_RS38830 and QEN71_RS38835 are separated by 118 nucleotides QEN71_RS38820: QEN71_RS38820 - IclR family transcriptional regulator, at 2,090,270 to 2,091,052 _RS38820 QEN71_RS38825: QEN71_RS38825 - aldo/keto reductase, at 2,091,076 to 2,091,906 _RS38825 QEN71_RS38830: QEN71_RS38830 - amidohydrolase family protein, at 2,091,941 to 2,092,774 _RS38830 QEN71_RS38835: QEN71_RS38835 - LysR substrate-binding domain-containing protein, at 2,092,893 to 2,093,810 _RS38835 Position (kb) 2091 2092 2093Strain fitness (log2 ratio) -2 -1 0 1at 2091.355 kb on - strand, within QEN71_RS38825at 2091.356 kb on + strand, within QEN71_RS38825at 2091.357 kb on - strand, within QEN71_RS38825at 2091.357 kb on - strand, within QEN71_RS38825at 2091.611 kb on + strand, within QEN71_RS38825at 2091.612 kb on - strand, within QEN71_RS38825at 2091.928 kb on + strandat 2091.929 kb on - strandat 2091.929 kb on - strandat 2091.929 kb on - strandat 2092.137 kb on + strand, within QEN71_RS38830at 2092.137 kb on + strand, within QEN71_RS38830at 2092.137 kb on + strand, within QEN71_RS38830at 2092.138 kb on - strand, within QEN71_RS38830at 2092.155 kb on + strand, within QEN71_RS38830at 2092.155 kb on + strand, within QEN71_RS38830at 2092.156 kb on - strand, within QEN71_RS38830at 2092.176 kb on + strand, within QEN71_RS38830at 2092.546 kb on - strand, within QEN71_RS38830at 2092.622 kb on + strand, within QEN71_RS38830at 2092.623 kb on - strand, within QEN71_RS38830at 2092.629 kb on + strand, within QEN71_RS38830at 2092.667 kb on + strand, within QEN71_RS38830at 2092.667 kb on + strand, within QEN71_RS38830at 2092.667 kb on + strand, within QEN71_RS38830at 2092.689 kb on + strand, within QEN71_RS38830at 2092.690 kb on - strand, within QEN71_RS38830at 2092.690 kb on - strand, within QEN71_RS38830at 2092.690 kb on - strand, within QEN71_RS38830at 2092.690 kb on - strand, within QEN71_RS38830at 2092.732 kb on + strandat 2092.732 kb on + strandat 2092.767 kb on - strandat 2092.808 kb on - strandat 2092.808 kb on - strandat 2092.832 kb on - strandat 2092.852 kb on + strandat 2092.852 kb on + strandat 2092.974 kb on + strandat 2092.975 kb on - strandat 2092.975 kb on - strandat 2092.975 kb on - strandat 2093.112 kb on + strand, within QEN71_RS38835at 2093.112 kb on + strand, within QEN71_RS38835at 2093.113 kb on - strand, within QEN71_RS38835at 2093.653 kb on + strand, within QEN71_RS38835at 2093.654 kb on - strand, within QEN71_RS38835at 2093.654 kb on - strand, within QEN71_RS38835

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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2,091,355 - QEN71_RS38825 0.34 -2.7
2,091,356 + QEN71_RS38825 0.34 -0.2
2,091,357 - QEN71_RS38825 0.34 +0.0
2,091,357 - QEN71_RS38825 0.34 +0.2
2,091,611 + QEN71_RS38825 0.64 -1.3
2,091,612 - QEN71_RS38825 0.65 -0.6
2,091,928 + -0.6
2,091,929 - -0.6
2,091,929 - -1.3
2,091,929 - -0.3
2,092,137 + QEN71_RS38830 0.24 +0.1
2,092,137 + QEN71_RS38830 0.24 -0.6
2,092,137 + QEN71_RS38830 0.24 +0.0
2,092,138 - QEN71_RS38830 0.24 -0.5
2,092,155 + QEN71_RS38830 0.26 +0.0
2,092,155 + QEN71_RS38830 0.26 -1.9
2,092,156 - QEN71_RS38830 0.26 -0.5
2,092,176 + QEN71_RS38830 0.28 +0.7
2,092,546 - QEN71_RS38830 0.73 -0.6
2,092,622 + QEN71_RS38830 0.82 -1.0
2,092,623 - QEN71_RS38830 0.82 -0.5
2,092,629 + QEN71_RS38830 0.82 +0.7
2,092,667 + QEN71_RS38830 0.87 -1.1
2,092,667 + QEN71_RS38830 0.87 +0.4
2,092,667 + QEN71_RS38830 0.87 -0.2
2,092,689 + QEN71_RS38830 0.90 -1.2
2,092,690 - QEN71_RS38830 0.90 -1.3
2,092,690 - QEN71_RS38830 0.90 -0.1
2,092,690 - QEN71_RS38830 0.90 -0.6
2,092,690 - QEN71_RS38830 0.90 +0.4
2,092,732 + -1.2
2,092,732 + +0.9
2,092,767 - -2.0
2,092,808 - -1.3
2,092,808 - +1.4
2,092,832 - +0.6
2,092,852 + -2.1
2,092,852 + -0.9
2,092,974 + -1.3
2,092,975 - -1.5
2,092,975 - -0.3
2,092,975 - -0.8
2,093,112 + QEN71_RS38835 0.24 -1.4
2,093,112 + QEN71_RS38835 0.24 -0.6
2,093,113 - QEN71_RS38835 0.24 +1.0
2,093,653 + QEN71_RS38835 0.83 -0.9
2,093,654 - QEN71_RS38835 0.83 +0.1
2,093,654 - QEN71_RS38835 0.83 -0.0

Or see this region's nucleotide sequence