Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38820 and QEN71_RS38825 are separated by 23 nucleotides QEN71_RS38825 and QEN71_RS38830 are separated by 34 nucleotides QEN71_RS38830 and QEN71_RS38835 are separated by 118 nucleotides
QEN71_RS38820: QEN71_RS38820 - IclR family transcriptional regulator, at 2,090,270 to 2,091,052
_RS38820
QEN71_RS38825: QEN71_RS38825 - aldo/keto reductase, at 2,091,076 to 2,091,906
_RS38825
QEN71_RS38830: QEN71_RS38830 - amidohydrolase family protein, at 2,091,941 to 2,092,774
_RS38830
QEN71_RS38835: QEN71_RS38835 - LysR substrate-binding domain-containing protein, at 2,092,893 to 2,093,810
_RS38835
Position (kb)
2091
2092
2093 Strain fitness (log2 ratio)
-2
-1
0
1 at 2091.355 kb on - strand, within QEN71_RS38825 at 2091.356 kb on + strand, within QEN71_RS38825 at 2091.357 kb on - strand, within QEN71_RS38825 at 2091.357 kb on - strand, within QEN71_RS38825 at 2091.611 kb on + strand, within QEN71_RS38825 at 2091.612 kb on - strand, within QEN71_RS38825 at 2091.928 kb on + strand at 2091.929 kb on - strand at 2091.929 kb on - strand at 2091.929 kb on - strand at 2092.137 kb on + strand, within QEN71_RS38830 at 2092.137 kb on + strand, within QEN71_RS38830 at 2092.137 kb on + strand, within QEN71_RS38830 at 2092.138 kb on - strand, within QEN71_RS38830 at 2092.155 kb on + strand, within QEN71_RS38830 at 2092.155 kb on + strand, within QEN71_RS38830 at 2092.156 kb on - strand, within QEN71_RS38830 at 2092.176 kb on + strand, within QEN71_RS38830 at 2092.546 kb on - strand, within QEN71_RS38830 at 2092.622 kb on + strand, within QEN71_RS38830 at 2092.623 kb on - strand, within QEN71_RS38830 at 2092.629 kb on + strand, within QEN71_RS38830 at 2092.667 kb on + strand, within QEN71_RS38830 at 2092.667 kb on + strand, within QEN71_RS38830 at 2092.667 kb on + strand, within QEN71_RS38830 at 2092.689 kb on + strand, within QEN71_RS38830 at 2092.690 kb on - strand, within QEN71_RS38830 at 2092.690 kb on - strand, within QEN71_RS38830 at 2092.690 kb on - strand, within QEN71_RS38830 at 2092.690 kb on - strand, within QEN71_RS38830 at 2092.732 kb on + strand at 2092.732 kb on + strand at 2092.767 kb on - strand at 2092.808 kb on - strand at 2092.808 kb on - strand at 2092.832 kb on - strand at 2092.852 kb on + strand at 2092.852 kb on + strand at 2092.974 kb on + strand at 2092.975 kb on - strand at 2092.975 kb on - strand at 2092.975 kb on - strand at 2093.112 kb on + strand, within QEN71_RS38835 at 2093.112 kb on + strand, within QEN71_RS38835 at 2093.113 kb on - strand, within QEN71_RS38835 at 2093.653 kb on + strand, within QEN71_RS38835 at 2093.654 kb on - strand, within QEN71_RS38835 at 2093.654 kb on - strand, within QEN71_RS38835
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 2,091,355 - QEN71_RS38825 0.34 -2.7 2,091,356 + QEN71_RS38825 0.34 -0.2 2,091,357 - QEN71_RS38825 0.34 +0.0 2,091,357 - QEN71_RS38825 0.34 +0.2 2,091,611 + QEN71_RS38825 0.64 -1.3 2,091,612 - QEN71_RS38825 0.65 -0.6 2,091,928 + -0.6 2,091,929 - -0.6 2,091,929 - -1.3 2,091,929 - -0.3 2,092,137 + QEN71_RS38830 0.24 +0.1 2,092,137 + QEN71_RS38830 0.24 -0.6 2,092,137 + QEN71_RS38830 0.24 +0.0 2,092,138 - QEN71_RS38830 0.24 -0.5 2,092,155 + QEN71_RS38830 0.26 +0.0 2,092,155 + QEN71_RS38830 0.26 -1.9 2,092,156 - QEN71_RS38830 0.26 -0.5 2,092,176 + QEN71_RS38830 0.28 +0.7 2,092,546 - QEN71_RS38830 0.73 -0.6 2,092,622 + QEN71_RS38830 0.82 -1.0 2,092,623 - QEN71_RS38830 0.82 -0.5 2,092,629 + QEN71_RS38830 0.82 +0.7 2,092,667 + QEN71_RS38830 0.87 -1.1 2,092,667 + QEN71_RS38830 0.87 +0.4 2,092,667 + QEN71_RS38830 0.87 -0.2 2,092,689 + QEN71_RS38830 0.90 -1.2 2,092,690 - QEN71_RS38830 0.90 -1.3 2,092,690 - QEN71_RS38830 0.90 -0.1 2,092,690 - QEN71_RS38830 0.90 -0.6 2,092,690 - QEN71_RS38830 0.90 +0.4 2,092,732 + -1.2 2,092,732 + +0.9 2,092,767 - -2.0 2,092,808 - -1.3 2,092,808 - +1.4 2,092,832 - +0.6 2,092,852 + -2.1 2,092,852 + -0.9 2,092,974 + -1.3 2,092,975 - -1.5 2,092,975 - -0.3 2,092,975 - -0.8 2,093,112 + QEN71_RS38835 0.24 -1.4 2,093,112 + QEN71_RS38835 0.24 -0.6 2,093,113 - QEN71_RS38835 0.24 +1.0 2,093,653 + QEN71_RS38835 0.83 -0.9 2,093,654 - QEN71_RS38835 0.83 +0.1 2,093,654 - QEN71_RS38835 0.83 -0.0
Or see this region's nucleotide sequence