Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS37420 and QEN71_RS37425 are separated by 9 nucleotides QEN71_RS37425 and QEN71_RS37430 are separated by 55 nucleotides QEN71_RS37430 and QEN71_RS37435 overlap by 17 nucleotides
QEN71_RS37420: QEN71_RS37420 - AraC family transcriptional regulator, at 1,767,151 to 1,768,065
_RS37420
QEN71_RS37425: QEN71_RS37425 - HlyD family secretion protein, at 1,768,075 to 1,769,040
_RS37425
QEN71_RS37430: QEN71_RS37430 - DUF1656 domain-containing protein, at 1,769,096 to 1,769,296
_RS37430
QEN71_RS37435: QEN71_RS37435 - efflux transporter outer membrane subunit, at 1,769,280 to 1,770,776
_RS37435
Position (kb)
1768
1769
1770 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1767.112 kb on + strand at 1767.113 kb on - strand at 1767.113 kb on - strand at 1767.269 kb on - strand, within QEN71_RS37420 at 1767.269 kb on - strand, within QEN71_RS37420 at 1767.400 kb on - strand, within QEN71_RS37420 at 1767.427 kb on - strand, within QEN71_RS37420 at 1767.427 kb on - strand, within QEN71_RS37420 at 1767.427 kb on - strand, within QEN71_RS37420 at 1767.461 kb on + strand, within QEN71_RS37420 at 1767.462 kb on - strand, within QEN71_RS37420 at 1767.463 kb on + strand, within QEN71_RS37420 at 1767.628 kb on + strand, within QEN71_RS37420 at 1767.629 kb on - strand, within QEN71_RS37420 at 1767.647 kb on + strand, within QEN71_RS37420 at 1767.698 kb on - strand, within QEN71_RS37420 at 1767.844 kb on + strand, within QEN71_RS37420 at 1767.844 kb on + strand, within QEN71_RS37420 at 1767.845 kb on - strand, within QEN71_RS37420 at 1768.063 kb on + strand at 1768.077 kb on - strand at 1768.077 kb on - strand at 1768.084 kb on + strand at 1768.085 kb on - strand at 1768.285 kb on + strand, within QEN71_RS37425 at 1768.285 kb on + strand, within QEN71_RS37425 at 1768.285 kb on + strand, within QEN71_RS37425 at 1768.286 kb on - strand, within QEN71_RS37425 at 1768.286 kb on - strand, within QEN71_RS37425 at 1768.286 kb on - strand, within QEN71_RS37425 at 1768.382 kb on + strand, within QEN71_RS37425 at 1768.452 kb on - strand, within QEN71_RS37425 at 1768.473 kb on - strand, within QEN71_RS37425 at 1768.550 kb on + strand, within QEN71_RS37425 at 1768.551 kb on - strand, within QEN71_RS37425 at 1768.571 kb on + strand, within QEN71_RS37425 at 1768.572 kb on - strand, within QEN71_RS37425 at 1768.592 kb on + strand, within QEN71_RS37425 at 1768.947 kb on - strand at 1768.947 kb on - strand at 1768.952 kb on + strand at 1768.952 kb on + strand at 1768.952 kb on + strand at 1769.175 kb on + strand, within QEN71_RS37430 at 1769.182 kb on - strand, within QEN71_RS37430 at 1769.256 kb on + strand, within QEN71_RS37430 at 1769.257 kb on - strand, within QEN71_RS37430 at 1769.394 kb on + strand at 1769.394 kb on + strand at 1769.498 kb on - strand, within QEN71_RS37435 at 1769.614 kb on + strand, within QEN71_RS37435 at 1769.614 kb on + strand, within QEN71_RS37435 at 1769.614 kb on + strand, within QEN71_RS37435 at 1769.614 kb on + strand, within QEN71_RS37435 at 1769.615 kb on - strand, within QEN71_RS37435 at 1769.715 kb on - strand, within QEN71_RS37435
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 1,767,112 + -0.4 1,767,113 - -0.0 1,767,113 - -0.6 1,767,269 - QEN71_RS37420 0.13 +1.6 1,767,269 - QEN71_RS37420 0.13 -1.2 1,767,400 - QEN71_RS37420 0.27 -1.9 1,767,427 - QEN71_RS37420 0.30 -0.8 1,767,427 - QEN71_RS37420 0.30 +0.5 1,767,427 - QEN71_RS37420 0.30 -1.1 1,767,461 + QEN71_RS37420 0.34 -0.3 1,767,462 - QEN71_RS37420 0.34 -0.5 1,767,463 + QEN71_RS37420 0.34 -2.5 1,767,628 + QEN71_RS37420 0.52 +0.5 1,767,629 - QEN71_RS37420 0.52 +1.6 1,767,647 + QEN71_RS37420 0.54 -0.3 1,767,698 - QEN71_RS37420 0.60 +0.2 1,767,844 + QEN71_RS37420 0.76 +1.4 1,767,844 + QEN71_RS37420 0.76 -1.7 1,767,845 - QEN71_RS37420 0.76 -0.2 1,768,063 + +2.0 1,768,077 - -0.5 1,768,077 - -0.2 1,768,084 + -1.6 1,768,085 - +0.0 1,768,285 + QEN71_RS37425 0.22 -0.7 1,768,285 + QEN71_RS37425 0.22 +0.0 1,768,285 + QEN71_RS37425 0.22 -1.0 1,768,286 - QEN71_RS37425 0.22 -0.5 1,768,286 - QEN71_RS37425 0.22 -0.3 1,768,286 - QEN71_RS37425 0.22 -0.3 1,768,382 + QEN71_RS37425 0.32 -0.4 1,768,452 - QEN71_RS37425 0.39 -0.7 1,768,473 - QEN71_RS37425 0.41 -1.4 1,768,550 + QEN71_RS37425 0.49 -0.7 1,768,551 - QEN71_RS37425 0.49 +1.1 1,768,571 + QEN71_RS37425 0.51 -0.7 1,768,572 - QEN71_RS37425 0.51 -0.2 1,768,592 + QEN71_RS37425 0.54 +0.0 1,768,947 - -0.3 1,768,947 - +0.3 1,768,952 + +0.1 1,768,952 + -0.5 1,768,952 + +1.9 1,769,175 + QEN71_RS37430 0.39 -0.9 1,769,182 - QEN71_RS37430 0.43 -0.5 1,769,256 + QEN71_RS37430 0.80 -0.3 1,769,257 - QEN71_RS37430 0.80 -1.9 1,769,394 + +0.2 1,769,394 + -0.3 1,769,498 - QEN71_RS37435 0.15 -0.8 1,769,614 + QEN71_RS37435 0.22 -0.1 1,769,614 + QEN71_RS37435 0.22 -1.8 1,769,614 + QEN71_RS37435 0.22 +0.3 1,769,614 + QEN71_RS37435 0.22 -0.9 1,769,615 - QEN71_RS37435 0.22 -0.6 1,769,715 - QEN71_RS37435 0.29 -0.3
Or see this region's nucleotide sequence