Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35945

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35945 and QEN71_RS35950 are separated by 26 nucleotides QEN71_RS35945: QEN71_RS35945 - hypothetical protein, at 1,445,808 to 1,446,170 _RS35945 QEN71_RS35950: QEN71_RS35950 - GGDEF domain-containing protein, at 1,446,197 to 1,447,360 _RS35950 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -2 -1 0 1at 1444.844 kb on + strandat 1444.989 kb on - strandat 1445.008 kb on - strandat 1445.274 kb on + strandat 1445.360 kb on - strandat 1445.750 kb on - strandat 1445.750 kb on - strandat 1445.794 kb on + strandat 1445.872 kb on - strand, within QEN71_RS35945at 1446.210 kb on - strandat 1446.265 kb on - strandat 1446.265 kb on - strandat 1446.304 kb on + strandat 1446.485 kb on - strand, within QEN71_RS35950at 1446.485 kb on - strand, within QEN71_RS35950at 1446.651 kb on - strand, within QEN71_RS35950at 1446.797 kb on + strand, within QEN71_RS35950at 1446.799 kb on + strand, within QEN71_RS35950at 1446.799 kb on + strand, within QEN71_RS35950at 1446.869 kb on + strand, within QEN71_RS35950at 1446.870 kb on - strand, within QEN71_RS35950at 1446.873 kb on + strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.874 kb on - strand, within QEN71_RS35950at 1446.971 kb on + strand, within QEN71_RS35950at 1446.980 kb on - strand, within QEN71_RS35950at 1447.050 kb on - strand, within QEN71_RS35950

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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1,444,844 + +0.7
1,444,989 - +0.6
1,445,008 - -0.9
1,445,274 + +0.2
1,445,360 - +1.2
1,445,750 - -0.1
1,445,750 - +0.8
1,445,794 + +1.4
1,445,872 - QEN71_RS35945 0.18 +0.1
1,446,210 - -0.2
1,446,265 - -1.4
1,446,265 - -0.0
1,446,304 + -0.4
1,446,485 - QEN71_RS35950 0.25 +0.5
1,446,485 - QEN71_RS35950 0.25 +0.7
1,446,651 - QEN71_RS35950 0.39 +0.1
1,446,797 + QEN71_RS35950 0.52 +0.6
1,446,799 + QEN71_RS35950 0.52 +0.6
1,446,799 + QEN71_RS35950 0.52 -0.0
1,446,869 + QEN71_RS35950 0.58 -0.3
1,446,870 - QEN71_RS35950 0.58 -0.8
1,446,873 + QEN71_RS35950 0.58 -0.4
1,446,874 - QEN71_RS35950 0.58 -1.1
1,446,874 - QEN71_RS35950 0.58 -1.8
1,446,874 - QEN71_RS35950 0.58 -0.6
1,446,874 - QEN71_RS35950 0.58 +0.8
1,446,874 - QEN71_RS35950 0.58 -0.2
1,446,971 + QEN71_RS35950 0.66 -0.1
1,446,980 - QEN71_RS35950 0.67 -1.8
1,447,050 - QEN71_RS35950 0.73 -0.2

Or see this region's nucleotide sequence