Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30220

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30215 and QEN71_RS30220 are separated by 83 nucleotides QEN71_RS30215: QEN71_RS30215 - LysR family transcriptional regulator, at 127,558 to 128,442 _RS30215 QEN71_RS30220: QEN71_RS30220 - hypothetical protein, at 128,526 to 129,053 _RS30220 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.565 kb on + strandat 127.565 kb on + strandat 127.565 kb on + strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.566 kb on - strandat 127.579 kb on + strandat 127.579 kb on + strandat 127.942 kb on + strand, within QEN71_RS30215at 127.942 kb on + strand, within QEN71_RS30215at 127.943 kb on - strand, within QEN71_RS30215at 128.368 kb on + strandat 128.458 kb on + strandat 128.524 kb on + strandat 128.525 kb on - strandat 128.525 kb on - strandat 128.585 kb on + strand, within QEN71_RS30220at 128.604 kb on + strand, within QEN71_RS30220at 128.604 kb on + strand, within QEN71_RS30220at 128.605 kb on - strand, within QEN71_RS30220at 129.115 kb on - strandat 129.115 kb on - strandat 129.129 kb on + strandat 129.130 kb on - strandat 129.130 kb on - strandat 129.130 kb on - strandat 129.145 kb on - strandat 129.145 kb on - strandat 129.159 kb on + strandat 129.159 kb on + strandat 129.160 kb on - strandat 129.160 kb on - strandat 129.160 kb on - strandat 129.160 kb on - strandat 129.174 kb on + strandat 129.189 kb on + strandat 129.204 kb on + strandat 129.235 kb on - strandat 129.294 kb on + strandat 129.309 kb on + strandat 129.310 kb on - strandat 129.417 kb on + strandat 129.418 kb on - strandat 129.418 kb on - strandat 129.543 kb on - strandat 129.543 kb on - strandat 129.543 kb on - strandat 129.543 kb on - strandat 129.563 kb on - strandat 129.669 kb on + strandat 129.753 kb on + strandat 129.819 kb on + strandat 129.819 kb on + strandat 129.819 kb on + strandat 129.820 kb on - strandat 129.820 kb on - strandat 129.820 kb on - strandat 129.837 kb on + strandat 129.837 kb on + strandat 129.838 kb on - strandat 129.866 kb on + strandat 129.867 kb on - strandat 130.036 kb on + strandat 130.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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127,565 + -0.6
127,565 + -0.1
127,565 + -0.3
127,566 - -1.8
127,566 - -0.5
127,566 - -0.1
127,566 - -1.8
127,566 - +0.7
127,566 - -1.0
127,566 - -0.0
127,579 + +0.2
127,579 + +0.2
127,942 + QEN71_RS30215 0.43 +1.0
127,942 + QEN71_RS30215 0.43 -0.3
127,943 - QEN71_RS30215 0.44 +1.1
128,368 + +0.4
128,458 + +2.3
128,524 + -0.2
128,525 - -3.2
128,525 - +0.5
128,585 + QEN71_RS30220 0.11 -1.7
128,604 + QEN71_RS30220 0.15 +0.5
128,604 + QEN71_RS30220 0.15 +0.1
128,605 - QEN71_RS30220 0.15 -1.2
129,115 - +0.2
129,115 - -2.3
129,129 + +0.2
129,130 - -0.7
129,130 - -0.5
129,130 - -0.3
129,145 - +0.7
129,145 - -0.6
129,159 + +1.6
129,159 + -0.4
129,160 - -0.0
129,160 - +1.5
129,160 - +0.1
129,160 - -0.3
129,174 + +0.5
129,189 + -0.8
129,204 + +1.2
129,235 - +1.2
129,294 + +2.0
129,309 + -0.3
129,310 - +0.7
129,417 + -0.4
129,418 - -0.3
129,418 - -0.3
129,543 - -0.3
129,543 - +0.6
129,543 - -0.3
129,543 - +1.4
129,563 - +1.5
129,669 + -0.3
129,753 + +0.0
129,819 + -0.5
129,819 + +0.8
129,819 + -0.5
129,820 - +0.6
129,820 - -1.2
129,820 - -1.1
129,837 + +0.2
129,837 + -0.3
129,838 - +0.6
129,866 + -0.2
129,867 - -0.3
130,036 + -0.3
130,036 + -1.6

Or see this region's nucleotide sequence