Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS18415 and QEN71_RS18420 are separated by 10 nucleotides QEN71_RS18420 and QEN71_RS18425 overlap by 4 nucleotides QEN71_RS18425 and QEN71_RS18430 are separated by 93 nucleotides
QEN71_RS18415: QEN71_RS18415 - formate dehydrogenase-N subunit alpha, at 4,101,318 to 4,104,389
_RS18415
QEN71_RS18420: QEN71_RS18420 - formate dehydrogenase subunit beta, at 4,104,400 to 4,105,338
_RS18420
QEN71_RS18425: QEN71_RS18425 - formate dehydrogenase subunit gamma, at 4,105,335 to 4,105,970
_RS18425
QEN71_RS18430: QEN71_RS18430 - formate dehydrogenase accessory protein FdhE, at 4,106,064 to 4,106,996
_RS18430
Position (kb)
4105
4106 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4104.592 kb on + strand, within QEN71_RS18420 at 4104.593 kb on - strand, within QEN71_RS18420 at 4104.593 kb on - strand, within QEN71_RS18420 at 4104.593 kb on - strand, within QEN71_RS18420 at 4104.641 kb on - strand, within QEN71_RS18420 at 4104.649 kb on + strand, within QEN71_RS18420 at 4104.761 kb on - strand, within QEN71_RS18420 at 4104.812 kb on - strand, within QEN71_RS18420 at 4104.871 kb on + strand, within QEN71_RS18420 at 4104.872 kb on - strand, within QEN71_RS18420 at 4104.872 kb on - strand, within QEN71_RS18420 at 4104.872 kb on - strand, within QEN71_RS18420 at 4104.872 kb on - strand, within QEN71_RS18420 at 4105.039 kb on + strand, within QEN71_RS18420 at 4105.040 kb on - strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.075 kb on + strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.076 kb on - strand, within QEN71_RS18420 at 4105.108 kb on + strand, within QEN71_RS18420 at 4105.226 kb on - strand, within QEN71_RS18420 at 4105.377 kb on + strand at 4105.378 kb on - strand at 4105.587 kb on + strand, within QEN71_RS18425 at 4105.587 kb on + strand, within QEN71_RS18425 at 4105.588 kb on - strand, within QEN71_RS18425 at 4105.588 kb on - strand, within QEN71_RS18425 at 4105.588 kb on - strand, within QEN71_RS18425 at 4105.588 kb on - strand, within QEN71_RS18425 at 4105.674 kb on + strand, within QEN71_RS18425 at 4105.674 kb on + strand, within QEN71_RS18425 at 4105.675 kb on - strand, within QEN71_RS18425 at 4105.675 kb on - strand, within QEN71_RS18425 at 4105.714 kb on + strand, within QEN71_RS18425 at 4105.714 kb on + strand, within QEN71_RS18425 at 4105.714 kb on + strand, within QEN71_RS18425 at 4105.714 kb on + strand, within QEN71_RS18425 at 4105.715 kb on - strand, within QEN71_RS18425 at 4105.715 kb on - strand, within QEN71_RS18425 at 4105.715 kb on - strand, within QEN71_RS18425 at 4105.774 kb on - strand, within QEN71_RS18425 at 4105.774 kb on - strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.856 kb on + strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.857 kb on - strand, within QEN71_RS18425 at 4105.860 kb on + strand, within QEN71_RS18425 at 4105.861 kb on - strand, within QEN71_RS18425 at 4105.861 kb on - strand, within QEN71_RS18425 at 4105.861 kb on - strand, within QEN71_RS18425 at 4106.023 kb on - strand at 4106.023 kb on - strand at 4106.211 kb on + strand, within QEN71_RS18430 at 4106.212 kb on - strand, within QEN71_RS18430 at 4106.324 kb on + strand, within QEN71_RS18430 at 4106.325 kb on - strand, within QEN71_RS18430 at 4106.360 kb on - strand, within QEN71_RS18430 at 4106.694 kb on + strand, within QEN71_RS18430 at 4106.724 kb on + strand, within QEN71_RS18430 at 4106.779 kb on - strand, within QEN71_RS18430 at 4106.779 kb on - strand, within QEN71_RS18430 at 4106.841 kb on + strand, within QEN71_RS18430 at 4106.857 kb on - strand, within QEN71_RS18430 at 4106.871 kb on + strand, within QEN71_RS18430 at 4106.872 kb on - strand, within QEN71_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 4,104,592 + QEN71_RS18420 0.20 -0.6 4,104,593 - QEN71_RS18420 0.21 +0.5 4,104,593 - QEN71_RS18420 0.21 +0.1 4,104,593 - QEN71_RS18420 0.21 +0.8 4,104,641 - QEN71_RS18420 0.26 +2.0 4,104,649 + QEN71_RS18420 0.27 -0.1 4,104,761 - QEN71_RS18420 0.38 +1.0 4,104,812 - QEN71_RS18420 0.44 -0.2 4,104,871 + QEN71_RS18420 0.50 -0.1 4,104,872 - QEN71_RS18420 0.50 -1.0 4,104,872 - QEN71_RS18420 0.50 +0.4 4,104,872 - QEN71_RS18420 0.50 -1.3 4,104,872 - QEN71_RS18420 0.50 -0.5 4,105,039 + QEN71_RS18420 0.68 -0.7 4,105,040 - QEN71_RS18420 0.68 +0.7 4,105,075 + QEN71_RS18420 0.72 +0.3 4,105,075 + QEN71_RS18420 0.72 -0.1 4,105,075 + QEN71_RS18420 0.72 +0.1 4,105,075 + QEN71_RS18420 0.72 -0.0 4,105,075 + QEN71_RS18420 0.72 +0.6 4,105,075 + QEN71_RS18420 0.72 -0.2 4,105,076 - QEN71_RS18420 0.72 +0.6 4,105,076 - QEN71_RS18420 0.72 -0.7 4,105,076 - QEN71_RS18420 0.72 +0.7 4,105,076 - QEN71_RS18420 0.72 -0.8 4,105,076 - QEN71_RS18420 0.72 -0.4 4,105,076 - QEN71_RS18420 0.72 -0.1 4,105,076 - QEN71_RS18420 0.72 -0.2 4,105,076 - QEN71_RS18420 0.72 -0.2 4,105,076 - QEN71_RS18420 0.72 -2.1 4,105,076 - QEN71_RS18420 0.72 -0.9 4,105,108 + QEN71_RS18420 0.75 -0.2 4,105,226 - QEN71_RS18420 0.88 -1.3 4,105,377 + -1.0 4,105,378 - +1.0 4,105,587 + QEN71_RS18425 0.40 -2.0 4,105,587 + QEN71_RS18425 0.40 +0.5 4,105,588 - QEN71_RS18425 0.40 +0.1 4,105,588 - QEN71_RS18425 0.40 +0.5 4,105,588 - QEN71_RS18425 0.40 -0.7 4,105,588 - QEN71_RS18425 0.40 -0.1 4,105,674 + QEN71_RS18425 0.53 +0.5 4,105,674 + QEN71_RS18425 0.53 -0.1 4,105,675 - QEN71_RS18425 0.53 -0.1 4,105,675 - QEN71_RS18425 0.53 -1.6 4,105,714 + QEN71_RS18425 0.60 -0.8 4,105,714 + QEN71_RS18425 0.60 +1.2 4,105,714 + QEN71_RS18425 0.60 -0.1 4,105,714 + QEN71_RS18425 0.60 -0.3 4,105,715 - QEN71_RS18425 0.60 +0.1 4,105,715 - QEN71_RS18425 0.60 +0.6 4,105,715 - QEN71_RS18425 0.60 -0.3 4,105,774 - QEN71_RS18425 0.69 -0.6 4,105,774 - QEN71_RS18425 0.69 +1.2 4,105,856 + QEN71_RS18425 0.82 +0.3 4,105,856 + QEN71_RS18425 0.82 -2.1 4,105,856 + QEN71_RS18425 0.82 -1.9 4,105,856 + QEN71_RS18425 0.82 +0.4 4,105,856 + QEN71_RS18425 0.82 +0.5 4,105,856 + QEN71_RS18425 0.82 -2.4 4,105,857 - QEN71_RS18425 0.82 +0.7 4,105,857 - QEN71_RS18425 0.82 +1.1 4,105,857 - QEN71_RS18425 0.82 -0.7 4,105,857 - QEN71_RS18425 0.82 -0.3 4,105,857 - QEN71_RS18425 0.82 -0.2 4,105,857 - QEN71_RS18425 0.82 +0.1 4,105,857 - QEN71_RS18425 0.82 +0.3 4,105,860 + QEN71_RS18425 0.83 +0.2 4,105,861 - QEN71_RS18425 0.83 +1.2 4,105,861 - QEN71_RS18425 0.83 -0.6 4,105,861 - QEN71_RS18425 0.83 +1.0 4,106,023 - -1.1 4,106,023 - -0.4 4,106,211 + QEN71_RS18430 0.16 -0.6 4,106,212 - QEN71_RS18430 0.16 +2.7 4,106,324 + QEN71_RS18430 0.28 -1.2 4,106,325 - QEN71_RS18430 0.28 -0.3 4,106,360 - QEN71_RS18430 0.32 +0.2 4,106,694 + QEN71_RS18430 0.68 -1.5 4,106,724 + QEN71_RS18430 0.71 -1.4 4,106,779 - QEN71_RS18430 0.77 +0.4 4,106,779 - QEN71_RS18430 0.77 -1.3 4,106,841 + QEN71_RS18430 0.83 +0.0 4,106,857 - QEN71_RS18430 0.85 -1.3 4,106,871 + QEN71_RS18430 0.86 +0.6 4,106,872 - QEN71_RS18430 0.87 +0.4
Or see this region's nucleotide sequence