Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS16830

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS16825 and QEN71_RS16830 are separated by 13 nucleotidesQEN71_RS16830 and QEN71_RS16835 are separated by 77 nucleotides QEN71_RS16825: QEN71_RS16825 - arabinose ABC transporter substrate-binding protein, at 3,727,126 to 3,728,130 _RS16825 QEN71_RS16830: QEN71_RS16830 - L-arabinose ABC transporter ATP-binding protein AraG, at 3,728,144 to 3,729,706 _RS16830 QEN71_RS16835: QEN71_RS16835 - L-arabinose ABC transporter permease AraH, at 3,729,784 to 3,730,800 _RS16835 Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3727.459 kb on + strand, within QEN71_RS16825at 3727.459 kb on + strand, within QEN71_RS16825at 3727.459 kb on + strand, within QEN71_RS16825at 3727.460 kb on - strand, within QEN71_RS16825at 3727.966 kb on + strand, within QEN71_RS16825at 3727.967 kb on - strand, within QEN71_RS16825at 3728.136 kb on + strandat 3728.137 kb on - strandat 3728.472 kb on - strand, within QEN71_RS16830at 3728.472 kb on - strand, within QEN71_RS16830at 3728.472 kb on - strand, within QEN71_RS16830at 3728.802 kb on - strand, within QEN71_RS16830at 3728.828 kb on + strand, within QEN71_RS16830at 3728.828 kb on + strand, within QEN71_RS16830at 3728.829 kb on - strand, within QEN71_RS16830at 3728.829 kb on - strand, within QEN71_RS16830at 3728.954 kb on + strand, within QEN71_RS16830at 3728.955 kb on - strand, within QEN71_RS16830at 3728.955 kb on - strand, within QEN71_RS16830at 3728.955 kb on - strand, within QEN71_RS16830at 3728.985 kb on + strand, within QEN71_RS16830at 3728.986 kb on - strand, within QEN71_RS16830at 3729.116 kb on + strand, within QEN71_RS16830at 3729.354 kb on - strand, within QEN71_RS16830at 3729.525 kb on - strand, within QEN71_RS16830at 3729.525 kb on - strand, within QEN71_RS16830at 3729.536 kb on + strand, within QEN71_RS16830at 3729.762 kb on + strandat 3729.763 kb on - strandat 3730.116 kb on + strand, within QEN71_RS16835at 3730.116 kb on + strand, within QEN71_RS16835at 3730.116 kb on + strand, within QEN71_RS16835at 3730.196 kb on - strand, within QEN71_RS16835at 3730.196 kb on - strand, within QEN71_RS16835at 3730.434 kb on + strand, within QEN71_RS16835at 3730.434 kb on + strand, within QEN71_RS16835at 3730.435 kb on - strand, within QEN71_RS16835at 3730.468 kb on - strand, within QEN71_RS16835

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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3,727,459 + QEN71_RS16825 0.33 -2.3
3,727,459 + QEN71_RS16825 0.33 -0.4
3,727,459 + QEN71_RS16825 0.33 -1.2
3,727,460 - QEN71_RS16825 0.33 +0.1
3,727,966 + QEN71_RS16825 0.84 -2.5
3,727,967 - QEN71_RS16825 0.84 -1.1
3,728,136 + -0.5
3,728,137 - +0.2
3,728,472 - QEN71_RS16830 0.21 -3.3
3,728,472 - QEN71_RS16830 0.21 -0.4
3,728,472 - QEN71_RS16830 0.21 -2.3
3,728,802 - QEN71_RS16830 0.42 +0.6
3,728,828 + QEN71_RS16830 0.44 -0.6
3,728,828 + QEN71_RS16830 0.44 +1.4
3,728,829 - QEN71_RS16830 0.44 -0.1
3,728,829 - QEN71_RS16830 0.44 -0.3
3,728,954 + QEN71_RS16830 0.52 -1.9
3,728,955 - QEN71_RS16830 0.52 +1.9
3,728,955 - QEN71_RS16830 0.52 -0.7
3,728,955 - QEN71_RS16830 0.52 -1.1
3,728,985 + QEN71_RS16830 0.54 -0.4
3,728,986 - QEN71_RS16830 0.54 -0.1
3,729,116 + QEN71_RS16830 0.62 -1.3
3,729,354 - QEN71_RS16830 0.77 +1.6
3,729,525 - QEN71_RS16830 0.88 +0.4
3,729,525 - QEN71_RS16830 0.88 +1.0
3,729,536 + QEN71_RS16830 0.89 -0.8
3,729,762 + -0.7
3,729,763 - -1.0
3,730,116 + QEN71_RS16835 0.33 -0.1
3,730,116 + QEN71_RS16835 0.33 +0.1
3,730,116 + QEN71_RS16835 0.33 +0.1
3,730,196 - QEN71_RS16835 0.41 -1.1
3,730,196 - QEN71_RS16835 0.41 -0.6
3,730,434 + QEN71_RS16835 0.64 -0.9
3,730,434 + QEN71_RS16835 0.64 +1.3
3,730,435 - QEN71_RS16835 0.64 -0.4
3,730,468 - QEN71_RS16835 0.67 -1.1

Or see this region's nucleotide sequence