Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13070

Experiment: Motility_outer_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS13060 and QEN71_RS13065 are separated by 202 nucleotidesQEN71_RS13065 and QEN71_RS13070 are separated by 81 nucleotidesQEN71_RS13070 and QEN71_RS13075 overlap by 4 nucleotidesQEN71_RS13075 and QEN71_RS13080 are separated by 16 nucleotides QEN71_RS13060: QEN71_RS13060 - DUF4148 domain-containing protein, at 2,921,349 to 2,921,657 _RS13060 QEN71_RS13065: QEN71_RS13065 - response regulator, at 2,921,860 to 2,922,225 _RS13065 QEN71_RS13070: QEN71_RS13070 - hypothetical protein, at 2,922,307 to 2,922,846 _RS13070 QEN71_RS13075: QEN71_RS13075 - methyl-accepting chemotaxis protein, at 2,922,843 to 2,923,583 _RS13075 QEN71_RS13080: QEN71_RS13080 - MCP four helix bundle domain-containing protein, at 2,923,600 to 2,925,990 _RS13080 Position (kb) 2922 2923Strain fitness (log2 ratio) -2 -1 0 1at 2921.315 kb on + strandat 2921.315 kb on + strandat 2921.315 kb on + strandat 2921.315 kb on + strandat 2921.316 kb on - strandat 2921.316 kb on - strandat 2921.316 kb on - strandat 2921.318 kb on + strandat 2921.319 kb on - strandat 2921.408 kb on + strand, within QEN71_RS13060at 2921.408 kb on + strand, within QEN71_RS13060at 2921.409 kb on - strand, within QEN71_RS13060at 2921.409 kb on - strand, within QEN71_RS13060at 2921.409 kb on - strand, within QEN71_RS13060at 2921.486 kb on + strand, within QEN71_RS13060at 2921.487 kb on - strand, within QEN71_RS13060at 2921.487 kb on - strand, within QEN71_RS13060at 2921.487 kb on - strand, within QEN71_RS13060at 2921.497 kb on + strand, within QEN71_RS13060at 2921.501 kb on + strand, within QEN71_RS13060at 2921.501 kb on + strand, within QEN71_RS13060at 2921.501 kb on + strand, within QEN71_RS13060at 2921.502 kb on - strand, within QEN71_RS13060at 2921.502 kb on - strand, within QEN71_RS13060at 2921.522 kb on + strand, within QEN71_RS13060at 2921.522 kb on + strand, within QEN71_RS13060at 2921.522 kb on + strand, within QEN71_RS13060at 2921.525 kb on - strand, within QEN71_RS13060at 2921.534 kb on + strand, within QEN71_RS13060at 2921.535 kb on - strand, within QEN71_RS13060at 2921.585 kb on + strand, within QEN71_RS13060at 2921.664 kb on + strandat 2921.664 kb on + strandat 2921.664 kb on + strandat 2921.665 kb on - strandat 2921.672 kb on + strandat 2921.672 kb on + strandat 2921.673 kb on - strandat 2921.673 kb on - strandat 2921.727 kb on + strandat 2921.768 kb on - strandat 2921.861 kb on + strandat 2921.862 kb on - strandat 2921.862 kb on - strandat 2921.862 kb on - strandat 2922.269 kb on - strandat 2922.410 kb on - strand, within QEN71_RS13070at 2922.410 kb on - strand, within QEN71_RS13070at 2922.447 kb on - strand, within QEN71_RS13070at 2922.497 kb on + strand, within QEN71_RS13070at 2922.620 kb on + strand, within QEN71_RS13070at 2922.621 kb on - strand, within QEN71_RS13070at 2922.621 kb on - strand, within QEN71_RS13070at 2922.623 kb on + strand, within QEN71_RS13070at 2922.624 kb on - strand, within QEN71_RS13070at 2922.962 kb on + strand, within QEN71_RS13075at 2922.991 kb on + strand, within QEN71_RS13075at 2922.992 kb on - strand, within QEN71_RS13075at 2922.992 kb on - strand, within QEN71_RS13075at 2923.498 kb on + strand, within QEN71_RS13075at 2923.499 kb on - strand, within QEN71_RS13075at 2923.570 kb on + strandat 2923.662 kb on + strandat 2923.697 kb on + strandat 2923.698 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
remove
2,921,315 + -2.5
2,921,315 + -0.1
2,921,315 + -1.0
2,921,315 + +0.6
2,921,316 - -0.7
2,921,316 - -0.6
2,921,316 - -1.7
2,921,318 + -0.0
2,921,319 - -1.0
2,921,408 + QEN71_RS13060 0.19 -0.5
2,921,408 + QEN71_RS13060 0.19 -0.8
2,921,409 - QEN71_RS13060 0.19 -0.4
2,921,409 - QEN71_RS13060 0.19 -0.7
2,921,409 - QEN71_RS13060 0.19 -1.3
2,921,486 + QEN71_RS13060 0.44 -0.8
2,921,487 - QEN71_RS13060 0.45 +0.3
2,921,487 - QEN71_RS13060 0.45 -1.3
2,921,487 - QEN71_RS13060 0.45 -1.3
2,921,497 + QEN71_RS13060 0.48 -1.9
2,921,501 + QEN71_RS13060 0.49 -1.2
2,921,501 + QEN71_RS13060 0.49 -0.1
2,921,501 + QEN71_RS13060 0.49 -2.6
2,921,502 - QEN71_RS13060 0.50 -1.3
2,921,502 - QEN71_RS13060 0.50 +0.1
2,921,522 + QEN71_RS13060 0.56 -0.8
2,921,522 + QEN71_RS13060 0.56 -0.6
2,921,522 + QEN71_RS13060 0.56 +0.5
2,921,525 - QEN71_RS13060 0.57 -0.0
2,921,534 + QEN71_RS13060 0.60 +0.7
2,921,535 - QEN71_RS13060 0.60 -0.6
2,921,585 + QEN71_RS13060 0.76 +0.8
2,921,664 + -1.3
2,921,664 + -1.2
2,921,664 + +0.7
2,921,665 - -0.6
2,921,672 + -1.1
2,921,672 + +0.5
2,921,673 - -0.9
2,921,673 - -0.2
2,921,727 + -0.8
2,921,768 - -1.0
2,921,861 + +1.0
2,921,862 - -1.1
2,921,862 - -0.6
2,921,862 - -0.2
2,922,269 - -1.0
2,922,410 - QEN71_RS13070 0.19 -0.0
2,922,410 - QEN71_RS13070 0.19 -0.9
2,922,447 - QEN71_RS13070 0.26 +0.7
2,922,497 + QEN71_RS13070 0.35 -0.6
2,922,620 + QEN71_RS13070 0.58 +0.6
2,922,621 - QEN71_RS13070 0.58 -0.3
2,922,621 - QEN71_RS13070 0.58 -0.1
2,922,623 + QEN71_RS13070 0.59 -0.0
2,922,624 - QEN71_RS13070 0.59 -0.9
2,922,962 + QEN71_RS13075 0.16 -1.6
2,922,991 + QEN71_RS13075 0.20 -1.6
2,922,992 - QEN71_RS13075 0.20 -1.8
2,922,992 - QEN71_RS13075 0.20 -2.6
2,923,498 + QEN71_RS13075 0.88 -1.7
2,923,499 - QEN71_RS13075 0.89 -0.8
2,923,570 + +1.3
2,923,662 + -0.4
2,923,697 + +0.2
2,923,698 - -0.0

Or see this region's nucleotide sequence