Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS13060 and QEN71_RS13065 are separated by 202 nucleotides QEN71_RS13065 and QEN71_RS13070 are separated by 81 nucleotides QEN71_RS13070 and QEN71_RS13075 overlap by 4 nucleotides QEN71_RS13075 and QEN71_RS13080 are separated by 16 nucleotides
QEN71_RS13060: QEN71_RS13060 - DUF4148 domain-containing protein, at 2,921,349 to 2,921,657
_RS13060
QEN71_RS13065: QEN71_RS13065 - response regulator, at 2,921,860 to 2,922,225
_RS13065
QEN71_RS13070: QEN71_RS13070 - hypothetical protein, at 2,922,307 to 2,922,846
_RS13070
QEN71_RS13075: QEN71_RS13075 - methyl-accepting chemotaxis protein, at 2,922,843 to 2,923,583
_RS13075
QEN71_RS13080: QEN71_RS13080 - MCP four helix bundle domain-containing protein, at 2,923,600 to 2,925,990
_RS13080
Position (kb)
2922
2923 Strain fitness (log2 ratio)
-2
-1
0
1 at 2921.315 kb on + strand at 2921.315 kb on + strand at 2921.315 kb on + strand at 2921.315 kb on + strand at 2921.316 kb on - strand at 2921.316 kb on - strand at 2921.316 kb on - strand at 2921.318 kb on + strand at 2921.319 kb on - strand at 2921.408 kb on + strand, within QEN71_RS13060 at 2921.408 kb on + strand, within QEN71_RS13060 at 2921.409 kb on - strand, within QEN71_RS13060 at 2921.409 kb on - strand, within QEN71_RS13060 at 2921.409 kb on - strand, within QEN71_RS13060 at 2921.486 kb on + strand, within QEN71_RS13060 at 2921.487 kb on - strand, within QEN71_RS13060 at 2921.487 kb on - strand, within QEN71_RS13060 at 2921.487 kb on - strand, within QEN71_RS13060 at 2921.497 kb on + strand, within QEN71_RS13060 at 2921.501 kb on + strand, within QEN71_RS13060 at 2921.501 kb on + strand, within QEN71_RS13060 at 2921.501 kb on + strand, within QEN71_RS13060 at 2921.502 kb on - strand, within QEN71_RS13060 at 2921.502 kb on - strand, within QEN71_RS13060 at 2921.522 kb on + strand, within QEN71_RS13060 at 2921.522 kb on + strand, within QEN71_RS13060 at 2921.522 kb on + strand, within QEN71_RS13060 at 2921.525 kb on - strand, within QEN71_RS13060 at 2921.534 kb on + strand, within QEN71_RS13060 at 2921.535 kb on - strand, within QEN71_RS13060 at 2921.585 kb on + strand, within QEN71_RS13060 at 2921.664 kb on + strand at 2921.664 kb on + strand at 2921.664 kb on + strand at 2921.665 kb on - strand at 2921.672 kb on + strand at 2921.672 kb on + strand at 2921.673 kb on - strand at 2921.673 kb on - strand at 2921.727 kb on + strand at 2921.768 kb on - strand at 2921.861 kb on + strand at 2921.862 kb on - strand at 2921.862 kb on - strand at 2921.862 kb on - strand at 2922.269 kb on - strand at 2922.410 kb on - strand, within QEN71_RS13070 at 2922.410 kb on - strand, within QEN71_RS13070 at 2922.447 kb on - strand, within QEN71_RS13070 at 2922.497 kb on + strand, within QEN71_RS13070 at 2922.620 kb on + strand, within QEN71_RS13070 at 2922.621 kb on - strand, within QEN71_RS13070 at 2922.621 kb on - strand, within QEN71_RS13070 at 2922.623 kb on + strand, within QEN71_RS13070 at 2922.624 kb on - strand, within QEN71_RS13070 at 2922.962 kb on + strand, within QEN71_RS13075 at 2922.991 kb on + strand, within QEN71_RS13075 at 2922.992 kb on - strand, within QEN71_RS13075 at 2922.992 kb on - strand, within QEN71_RS13075 at 2923.498 kb on + strand, within QEN71_RS13075 at 2923.499 kb on - strand, within QEN71_RS13075 at 2923.570 kb on + strand at 2923.662 kb on + strand at 2923.697 kb on + strand at 2923.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 2,921,315 + -2.5 2,921,315 + -0.1 2,921,315 + -1.0 2,921,315 + +0.6 2,921,316 - -0.7 2,921,316 - -0.6 2,921,316 - -1.7 2,921,318 + -0.0 2,921,319 - -1.0 2,921,408 + QEN71_RS13060 0.19 -0.5 2,921,408 + QEN71_RS13060 0.19 -0.8 2,921,409 - QEN71_RS13060 0.19 -0.4 2,921,409 - QEN71_RS13060 0.19 -0.7 2,921,409 - QEN71_RS13060 0.19 -1.3 2,921,486 + QEN71_RS13060 0.44 -0.8 2,921,487 - QEN71_RS13060 0.45 +0.3 2,921,487 - QEN71_RS13060 0.45 -1.3 2,921,487 - QEN71_RS13060 0.45 -1.3 2,921,497 + QEN71_RS13060 0.48 -1.9 2,921,501 + QEN71_RS13060 0.49 -1.2 2,921,501 + QEN71_RS13060 0.49 -0.1 2,921,501 + QEN71_RS13060 0.49 -2.6 2,921,502 - QEN71_RS13060 0.50 -1.3 2,921,502 - QEN71_RS13060 0.50 +0.1 2,921,522 + QEN71_RS13060 0.56 -0.8 2,921,522 + QEN71_RS13060 0.56 -0.6 2,921,522 + QEN71_RS13060 0.56 +0.5 2,921,525 - QEN71_RS13060 0.57 -0.0 2,921,534 + QEN71_RS13060 0.60 +0.7 2,921,535 - QEN71_RS13060 0.60 -0.6 2,921,585 + QEN71_RS13060 0.76 +0.8 2,921,664 + -1.3 2,921,664 + -1.2 2,921,664 + +0.7 2,921,665 - -0.6 2,921,672 + -1.1 2,921,672 + +0.5 2,921,673 - -0.9 2,921,673 - -0.2 2,921,727 + -0.8 2,921,768 - -1.0 2,921,861 + +1.0 2,921,862 - -1.1 2,921,862 - -0.6 2,921,862 - -0.2 2,922,269 - -1.0 2,922,410 - QEN71_RS13070 0.19 -0.0 2,922,410 - QEN71_RS13070 0.19 -0.9 2,922,447 - QEN71_RS13070 0.26 +0.7 2,922,497 + QEN71_RS13070 0.35 -0.6 2,922,620 + QEN71_RS13070 0.58 +0.6 2,922,621 - QEN71_RS13070 0.58 -0.3 2,922,621 - QEN71_RS13070 0.58 -0.1 2,922,623 + QEN71_RS13070 0.59 -0.0 2,922,624 - QEN71_RS13070 0.59 -0.9 2,922,962 + QEN71_RS13075 0.16 -1.6 2,922,991 + QEN71_RS13075 0.20 -1.6 2,922,992 - QEN71_RS13075 0.20 -1.8 2,922,992 - QEN71_RS13075 0.20 -2.6 2,923,498 + QEN71_RS13075 0.88 -1.7 2,923,499 - QEN71_RS13075 0.89 -0.8 2,923,570 + +1.3 2,923,662 + -0.4 2,923,697 + +0.2 2,923,698 - -0.0
Or see this region's nucleotide sequence