Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12185

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12180 and QEN71_RS12185 are separated by 103 nucleotidesQEN71_RS12185 and QEN71_RS12190 are separated by 271 nucleotides QEN71_RS12180: QEN71_RS12180 - dicarboxylate/amino acid:cation symporter, at 2,718,298 to 2,719,611 _RS12180 QEN71_RS12185: QEN71_RS12185 - D-2-hydroxyacid dehydrogenase, at 2,719,715 to 2,720,698 _RS12185 QEN71_RS12190: QEN71_RS12190 - glycerate kinase, at 2,720,970 to 2,722,112 _RS12190 Position (kb) 2719 2720 2721Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2718.926 kb on - strand, within QEN71_RS12180at 2718.926 kb on - strand, within QEN71_RS12180at 2718.977 kb on - strand, within QEN71_RS12180at 2718.984 kb on + strand, within QEN71_RS12180at 2719.025 kb on - strand, within QEN71_RS12180at 2719.025 kb on - strand, within QEN71_RS12180at 2719.238 kb on - strand, within QEN71_RS12180at 2719.263 kb on + strand, within QEN71_RS12180at 2719.264 kb on - strand, within QEN71_RS12180at 2719.270 kb on - strand, within QEN71_RS12180at 2719.468 kb on - strand, within QEN71_RS12180at 2719.471 kb on + strand, within QEN71_RS12180at 2719.471 kb on + strand, within QEN71_RS12180at 2719.471 kb on + strand, within QEN71_RS12180at 2719.472 kb on - strand, within QEN71_RS12180at 2719.610 kb on - strandat 2719.710 kb on - strandat 2719.788 kb on + strandat 2719.850 kb on - strand, within QEN71_RS12185at 2720.016 kb on - strand, within QEN71_RS12185at 2720.288 kb on + strand, within QEN71_RS12185at 2720.367 kb on + strand, within QEN71_RS12185at 2720.368 kb on - strand, within QEN71_RS12185at 2720.370 kb on + strand, within QEN71_RS12185at 2720.502 kb on + strand, within QEN71_RS12185at 2720.503 kb on - strand, within QEN71_RS12185at 2720.503 kb on - strand, within QEN71_RS12185at 2720.503 kb on - strand, within QEN71_RS12185at 2720.503 kb on - strand, within QEN71_RS12185at 2720.503 kb on - strand, within QEN71_RS12185at 2720.629 kb on - strandat 2720.797 kb on + strandat 2720.809 kb on + strandat 2720.810 kb on - strandat 2720.882 kb on - strandat 2720.931 kb on + strandat 2720.932 kb on - strandat 2721.010 kb on + strandat 2721.011 kb on - strandat 2721.403 kb on + strand, within QEN71_RS12190at 2721.404 kb on - strand, within QEN71_RS12190at 2721.487 kb on + strand, within QEN71_RS12190at 2721.487 kb on + strand, within QEN71_RS12190at 2721.487 kb on + strand, within QEN71_RS12190at 2721.488 kb on - strand, within QEN71_RS12190at 2721.494 kb on + strand, within QEN71_RS12190at 2721.494 kb on + strand, within QEN71_RS12190at 2721.535 kb on + strand, within QEN71_RS12190at 2721.535 kb on + strand, within QEN71_RS12190at 2721.536 kb on - strand, within QEN71_RS12190at 2721.662 kb on + strand, within QEN71_RS12190at 2721.662 kb on + strand, within QEN71_RS12190at 2721.662 kb on + strand, within QEN71_RS12190

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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2,718,926 - QEN71_RS12180 0.48 +0.6
2,718,926 - QEN71_RS12180 0.48 +0.6
2,718,977 - QEN71_RS12180 0.52 -1.4
2,718,984 + QEN71_RS12180 0.52 -1.2
2,719,025 - QEN71_RS12180 0.55 +2.2
2,719,025 - QEN71_RS12180 0.55 -0.0
2,719,238 - QEN71_RS12180 0.72 -1.3
2,719,263 + QEN71_RS12180 0.73 -0.3
2,719,264 - QEN71_RS12180 0.74 +0.6
2,719,270 - QEN71_RS12180 0.74 -0.4
2,719,468 - QEN71_RS12180 0.89 -0.4
2,719,471 + QEN71_RS12180 0.89 -1.9
2,719,471 + QEN71_RS12180 0.89 -0.0
2,719,471 + QEN71_RS12180 0.89 -1.7
2,719,472 - QEN71_RS12180 0.89 +1.5
2,719,610 - -1.1
2,719,710 - -0.6
2,719,788 + +0.6
2,719,850 - QEN71_RS12185 0.14 +0.3
2,720,016 - QEN71_RS12185 0.31 -0.6
2,720,288 + QEN71_RS12185 0.58 +0.2
2,720,367 + QEN71_RS12185 0.66 +1.6
2,720,368 - QEN71_RS12185 0.66 -0.5
2,720,370 + QEN71_RS12185 0.67 -0.8
2,720,502 + QEN71_RS12185 0.80 -1.1
2,720,503 - QEN71_RS12185 0.80 -3.6
2,720,503 - QEN71_RS12185 0.80 -0.0
2,720,503 - QEN71_RS12185 0.80 +1.2
2,720,503 - QEN71_RS12185 0.80 +3.1
2,720,503 - QEN71_RS12185 0.80 -0.9
2,720,629 - -1.7
2,720,797 + -0.8
2,720,809 + -0.4
2,720,810 - -0.3
2,720,882 - -2.9
2,720,931 + +0.1
2,720,932 - -0.4
2,721,010 + +0.3
2,721,011 - -2.2
2,721,403 + QEN71_RS12190 0.38 -0.8
2,721,404 - QEN71_RS12190 0.38 -1.4
2,721,487 + QEN71_RS12190 0.45 +1.1
2,721,487 + QEN71_RS12190 0.45 -1.9
2,721,487 + QEN71_RS12190 0.45 -0.6
2,721,488 - QEN71_RS12190 0.45 +0.6
2,721,494 + QEN71_RS12190 0.46 +0.0
2,721,494 + QEN71_RS12190 0.46 -1.3
2,721,535 + QEN71_RS12190 0.49 -0.7
2,721,535 + QEN71_RS12190 0.49 -0.6
2,721,536 - QEN71_RS12190 0.50 -0.4
2,721,662 + QEN71_RS12190 0.61 +0.3
2,721,662 + QEN71_RS12190 0.61 -0.0
2,721,662 + QEN71_RS12190 0.61 -0.0

Or see this region's nucleotide sequence