Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS12180 and QEN71_RS12185 are separated by 103 nucleotides QEN71_RS12185 and QEN71_RS12190 are separated by 271 nucleotides
QEN71_RS12180: QEN71_RS12180 - dicarboxylate/amino acid:cation symporter, at 2,718,298 to 2,719,611
_RS12180
QEN71_RS12185: QEN71_RS12185 - D-2-hydroxyacid dehydrogenase, at 2,719,715 to 2,720,698
_RS12185
QEN71_RS12190: QEN71_RS12190 - glycerate kinase, at 2,720,970 to 2,722,112
_RS12190
Position (kb)
2719
2720
2721 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2718.926 kb on - strand, within QEN71_RS12180 at 2718.926 kb on - strand, within QEN71_RS12180 at 2718.977 kb on - strand, within QEN71_RS12180 at 2718.984 kb on + strand, within QEN71_RS12180 at 2719.025 kb on - strand, within QEN71_RS12180 at 2719.025 kb on - strand, within QEN71_RS12180 at 2719.238 kb on - strand, within QEN71_RS12180 at 2719.263 kb on + strand, within QEN71_RS12180 at 2719.264 kb on - strand, within QEN71_RS12180 at 2719.270 kb on - strand, within QEN71_RS12180 at 2719.468 kb on - strand, within QEN71_RS12180 at 2719.471 kb on + strand, within QEN71_RS12180 at 2719.471 kb on + strand, within QEN71_RS12180 at 2719.471 kb on + strand, within QEN71_RS12180 at 2719.472 kb on - strand, within QEN71_RS12180 at 2719.610 kb on - strand at 2719.710 kb on - strand at 2719.788 kb on + strand at 2719.850 kb on - strand, within QEN71_RS12185 at 2720.016 kb on - strand, within QEN71_RS12185 at 2720.288 kb on + strand, within QEN71_RS12185 at 2720.367 kb on + strand, within QEN71_RS12185 at 2720.368 kb on - strand, within QEN71_RS12185 at 2720.370 kb on + strand, within QEN71_RS12185 at 2720.502 kb on + strand, within QEN71_RS12185 at 2720.503 kb on - strand, within QEN71_RS12185 at 2720.503 kb on - strand, within QEN71_RS12185 at 2720.503 kb on - strand, within QEN71_RS12185 at 2720.503 kb on - strand, within QEN71_RS12185 at 2720.503 kb on - strand, within QEN71_RS12185 at 2720.629 kb on - strand at 2720.797 kb on + strand at 2720.809 kb on + strand at 2720.810 kb on - strand at 2720.882 kb on - strand at 2720.931 kb on + strand at 2720.932 kb on - strand at 2721.010 kb on + strand at 2721.011 kb on - strand at 2721.403 kb on + strand, within QEN71_RS12190 at 2721.404 kb on - strand, within QEN71_RS12190 at 2721.487 kb on + strand, within QEN71_RS12190 at 2721.487 kb on + strand, within QEN71_RS12190 at 2721.487 kb on + strand, within QEN71_RS12190 at 2721.488 kb on - strand, within QEN71_RS12190 at 2721.494 kb on + strand, within QEN71_RS12190 at 2721.494 kb on + strand, within QEN71_RS12190 at 2721.535 kb on + strand, within QEN71_RS12190 at 2721.535 kb on + strand, within QEN71_RS12190 at 2721.536 kb on - strand, within QEN71_RS12190 at 2721.662 kb on + strand, within QEN71_RS12190 at 2721.662 kb on + strand, within QEN71_RS12190 at 2721.662 kb on + strand, within QEN71_RS12190
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 2,718,926 - QEN71_RS12180 0.48 +0.6 2,718,926 - QEN71_RS12180 0.48 +0.6 2,718,977 - QEN71_RS12180 0.52 -1.4 2,718,984 + QEN71_RS12180 0.52 -1.2 2,719,025 - QEN71_RS12180 0.55 +2.2 2,719,025 - QEN71_RS12180 0.55 -0.0 2,719,238 - QEN71_RS12180 0.72 -1.3 2,719,263 + QEN71_RS12180 0.73 -0.3 2,719,264 - QEN71_RS12180 0.74 +0.6 2,719,270 - QEN71_RS12180 0.74 -0.4 2,719,468 - QEN71_RS12180 0.89 -0.4 2,719,471 + QEN71_RS12180 0.89 -1.9 2,719,471 + QEN71_RS12180 0.89 -0.0 2,719,471 + QEN71_RS12180 0.89 -1.7 2,719,472 - QEN71_RS12180 0.89 +1.5 2,719,610 - -1.1 2,719,710 - -0.6 2,719,788 + +0.6 2,719,850 - QEN71_RS12185 0.14 +0.3 2,720,016 - QEN71_RS12185 0.31 -0.6 2,720,288 + QEN71_RS12185 0.58 +0.2 2,720,367 + QEN71_RS12185 0.66 +1.6 2,720,368 - QEN71_RS12185 0.66 -0.5 2,720,370 + QEN71_RS12185 0.67 -0.8 2,720,502 + QEN71_RS12185 0.80 -1.1 2,720,503 - QEN71_RS12185 0.80 -3.6 2,720,503 - QEN71_RS12185 0.80 -0.0 2,720,503 - QEN71_RS12185 0.80 +1.2 2,720,503 - QEN71_RS12185 0.80 +3.1 2,720,503 - QEN71_RS12185 0.80 -0.9 2,720,629 - -1.7 2,720,797 + -0.8 2,720,809 + -0.4 2,720,810 - -0.3 2,720,882 - -2.9 2,720,931 + +0.1 2,720,932 - -0.4 2,721,010 + +0.3 2,721,011 - -2.2 2,721,403 + QEN71_RS12190 0.38 -0.8 2,721,404 - QEN71_RS12190 0.38 -1.4 2,721,487 + QEN71_RS12190 0.45 +1.1 2,721,487 + QEN71_RS12190 0.45 -1.9 2,721,487 + QEN71_RS12190 0.45 -0.6 2,721,488 - QEN71_RS12190 0.45 +0.6 2,721,494 + QEN71_RS12190 0.46 +0.0 2,721,494 + QEN71_RS12190 0.46 -1.3 2,721,535 + QEN71_RS12190 0.49 -0.7 2,721,535 + QEN71_RS12190 0.49 -0.6 2,721,536 - QEN71_RS12190 0.50 -0.4 2,721,662 + QEN71_RS12190 0.61 +0.3 2,721,662 + QEN71_RS12190 0.61 -0.0 2,721,662 + QEN71_RS12190 0.61 -0.0
Or see this region's nucleotide sequence