Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08895

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08885 and QEN71_RS08890 are separated by 223 nucleotidesQEN71_RS08890 and QEN71_RS08895 are separated by 228 nucleotidesQEN71_RS08895 and QEN71_RS08900 are separated by 309 nucleotides QEN71_RS08885: QEN71_RS08885 - phosphate ABC transporter substrate-binding protein PstS, at 1,995,347 to 1,996,378 _RS08885 QEN71_RS08890: QEN71_RS08890 - hypothetical protein, at 1,996,602 to 1,996,802 _RS08890 QEN71_RS08895: QEN71_RS08895 - methyl-accepting chemotaxis protein, at 1,997,031 to 1,998,581 _RS08895 QEN71_RS08900: QEN71_RS08900 - hypothetical protein, at 1,998,891 to 1,999,889 _RS08900 Position (kb) 1997 1998 1999Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1996.121 kb on + strand, within QEN71_RS08885at 1996.121 kb on + strand, within QEN71_RS08885at 1996.121 kb on + strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.122 kb on - strand, within QEN71_RS08885at 1996.286 kb on + strandat 1996.286 kb on + strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.287 kb on - strandat 1996.412 kb on - strandat 1996.535 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.585 kb on + strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.586 kb on - strandat 1996.734 kb on + strand, within QEN71_RS08890at 1996.735 kb on - strand, within QEN71_RS08890at 1996.758 kb on + strand, within QEN71_RS08890at 1996.758 kb on + strand, within QEN71_RS08890at 1996.758 kb on + strand, within QEN71_RS08890at 1996.759 kb on - strand, within QEN71_RS08890at 1996.759 kb on - strand, within QEN71_RS08890at 1996.900 kb on + strandat 1996.901 kb on - strandat 1996.938 kb on - strandat 1996.938 kb on - strandat 1997.100 kb on + strandat 1997.100 kb on + strandat 1997.100 kb on + strandat 1997.100 kb on + strandat 1997.100 kb on + strandat 1997.101 kb on - strandat 1997.101 kb on - strandat 1997.101 kb on - strandat 1997.101 kb on - strandat 1997.101 kb on - strandat 1997.101 kb on - strandat 1997.110 kb on - strandat 1997.136 kb on + strandat 1997.136 kb on + strandat 1997.137 kb on - strandat 1997.864 kb on + strand, within QEN71_RS08895at 1997.864 kb on + strand, within QEN71_RS08895at 1997.865 kb on - strand, within QEN71_RS08895at 1998.579 kb on + strandat 1998.588 kb on - strandat 1998.588 kb on - strandat 1998.594 kb on - strandat 1998.612 kb on + strandat 1998.681 kb on - strandat 1998.706 kb on + strandat 1998.748 kb on + strandat 1998.749 kb on - strandat 1998.797 kb on - strandat 1998.802 kb on + strandat 1998.838 kb on + strandat 1999.009 kb on - strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.080 kb on + strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.081 kb on - strand, within QEN71_RS08900at 1999.224 kb on - strand, within QEN71_RS08900at 1999.270 kb on - strand, within QEN71_RS08900at 1999.321 kb on - strand, within QEN71_RS08900at 1999.436 kb on + strand, within QEN71_RS08900at 1999.436 kb on + strand, within QEN71_RS08900at 1999.437 kb on - strand, within QEN71_RS08900at 1999.437 kb on - strand, within QEN71_RS08900at 1999.437 kb on - strand, within QEN71_RS08900at 1999.543 kb on - strand, within QEN71_RS08900at 1999.543 kb on - strand, within QEN71_RS08900

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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1,996,121 + QEN71_RS08885 0.75 -2.0
1,996,121 + QEN71_RS08885 0.75 +1.3
1,996,121 + QEN71_RS08885 0.75 -0.7
1,996,122 - QEN71_RS08885 0.75 -0.3
1,996,122 - QEN71_RS08885 0.75 +0.0
1,996,122 - QEN71_RS08885 0.75 -0.4
1,996,122 - QEN71_RS08885 0.75 -1.8
1,996,122 - QEN71_RS08885 0.75 -0.5
1,996,122 - QEN71_RS08885 0.75 -0.8
1,996,122 - QEN71_RS08885 0.75 +0.2
1,996,286 + -0.6
1,996,286 + -0.9
1,996,287 - -1.4
1,996,287 - -1.5
1,996,287 - +0.5
1,996,287 - +1.6
1,996,287 - +1.5
1,996,287 - -2.8
1,996,287 - -0.3
1,996,412 - -0.5
1,996,535 + -1.0
1,996,585 + -0.2
1,996,585 + +2.0
1,996,585 + +1.7
1,996,585 + +0.2
1,996,585 + +2.0
1,996,585 + +0.2
1,996,585 + +0.8
1,996,585 + +0.1
1,996,585 + +0.5
1,996,585 + +0.7
1,996,586 - +1.3
1,996,586 - +2.4
1,996,586 - +1.3
1,996,586 - -0.2
1,996,586 - -0.7
1,996,586 - +0.7
1,996,586 - +0.1
1,996,586 - +0.6
1,996,586 - -0.1
1,996,586 - -0.4
1,996,586 - -1.1
1,996,734 + QEN71_RS08890 0.66 -0.0
1,996,735 - QEN71_RS08890 0.66 +0.0
1,996,758 + QEN71_RS08890 0.78 -0.6
1,996,758 + QEN71_RS08890 0.78 -1.2
1,996,758 + QEN71_RS08890 0.78 -0.2
1,996,759 - QEN71_RS08890 0.78 -0.7
1,996,759 - QEN71_RS08890 0.78 +0.5
1,996,900 + -0.8
1,996,901 - -0.1
1,996,938 - -0.2
1,996,938 - +0.9
1,997,100 + -1.0
1,997,100 + +0.4
1,997,100 + +1.3
1,997,100 + -0.8
1,997,100 + -3.2
1,997,101 - -0.2
1,997,101 - -1.6
1,997,101 - -1.8
1,997,101 - -0.4
1,997,101 - +1.6
1,997,101 - -0.4
1,997,110 - -1.0
1,997,136 + -0.6
1,997,136 + -0.7
1,997,137 - -2.0
1,997,864 + QEN71_RS08895 0.54 -2.6
1,997,864 + QEN71_RS08895 0.54 -0.3
1,997,865 - QEN71_RS08895 0.54 -0.4
1,998,579 + -0.1
1,998,588 - +0.5
1,998,588 - +0.2
1,998,594 - -1.4
1,998,612 + +0.2
1,998,681 - -0.5
1,998,706 + -0.4
1,998,748 + -0.3
1,998,749 - -0.8
1,998,797 - +0.8
1,998,802 + -2.6
1,998,838 + -0.3
1,999,009 - QEN71_RS08900 0.12 +0.3
1,999,080 + QEN71_RS08900 0.19 -0.3
1,999,080 + QEN71_RS08900 0.19 -1.2
1,999,080 + QEN71_RS08900 0.19 +0.3
1,999,080 + QEN71_RS08900 0.19 +0.3
1,999,080 + QEN71_RS08900 0.19 +0.4
1,999,080 + QEN71_RS08900 0.19 -0.2
1,999,080 + QEN71_RS08900 0.19 +0.7
1,999,081 - QEN71_RS08900 0.19 +0.8
1,999,081 - QEN71_RS08900 0.19 +1.1
1,999,081 - QEN71_RS08900 0.19 -0.3
1,999,081 - QEN71_RS08900 0.19 -1.7
1,999,081 - QEN71_RS08900 0.19 -1.5
1,999,081 - QEN71_RS08900 0.19 -2.4
1,999,081 - QEN71_RS08900 0.19 +1.0
1,999,224 - QEN71_RS08900 0.33 -1.7
1,999,270 - QEN71_RS08900 0.38 +0.0
1,999,321 - QEN71_RS08900 0.43 +0.5
1,999,436 + QEN71_RS08900 0.55 -0.2
1,999,436 + QEN71_RS08900 0.55 +0.0
1,999,437 - QEN71_RS08900 0.55 +1.8
1,999,437 - QEN71_RS08900 0.55 -0.5
1,999,437 - QEN71_RS08900 0.55 +0.1
1,999,543 - QEN71_RS08900 0.65 -2.4
1,999,543 - QEN71_RS08900 0.65 +0.5

Or see this region's nucleotide sequence