Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02595

Experiment: Motility_outer_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS02590 and QEN71_RS02595 are separated by 265 nucleotidesQEN71_RS02595 and QEN71_RS02600 overlap by 4 nucleotidesQEN71_RS02600 and QEN71_RS02605 overlap by 4 nucleotides QEN71_RS02590: QEN71_RS02590 - sugar ABC transporter substrate-binding protein, at 580,028 to 581,350 _RS02590 QEN71_RS02595: QEN71_RS02595 - sugar ABC transporter permease, at 581,616 to 582,527 _RS02595 QEN71_RS02600: QEN71_RS02600 - carbohydrate ABC transporter permease, at 582,524 to 583,390 _RS02600 QEN71_RS02605: QEN71_RS02605 - HAD family phosphatase, at 583,387 to 584,079 _RS02605 Position (kb) 581 582 583Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.616 kb on + strand, within QEN71_RS02590at 580.617 kb on - strand, within QEN71_RS02590at 580.617 kb on - strand, within QEN71_RS02590at 580.617 kb on - strand, within QEN71_RS02590at 580.617 kb on - strand, within QEN71_RS02590at 580.715 kb on + strand, within QEN71_RS02590at 580.715 kb on + strand, within QEN71_RS02590at 580.715 kb on + strand, within QEN71_RS02590at 580.716 kb on - strand, within QEN71_RS02590at 580.716 kb on - strand, within QEN71_RS02590at 580.844 kb on + strand, within QEN71_RS02590at 580.844 kb on + strand, within QEN71_RS02590at 580.844 kb on + strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 580.845 kb on - strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.015 kb on + strand, within QEN71_RS02590at 581.016 kb on - strand, within QEN71_RS02590at 581.016 kb on - strand, within QEN71_RS02590at 581.016 kb on - strand, within QEN71_RS02590at 581.016 kb on - strand, within QEN71_RS02590at 581.016 kb on - strand, within QEN71_RS02590at 581.081 kb on + strand, within QEN71_RS02590at 581.081 kb on + strand, within QEN71_RS02590at 581.081 kb on + strand, within QEN71_RS02590at 581.081 kb on + strand, within QEN71_RS02590at 581.082 kb on - strand, within QEN71_RS02590at 581.082 kb on - strand, within QEN71_RS02590at 581.082 kb on - strand, within QEN71_RS02590at 581.096 kb on + strand, within QEN71_RS02590at 581.097 kb on - strand, within QEN71_RS02590at 581.097 kb on - strand, within QEN71_RS02590at 581.097 kb on - strand, within QEN71_RS02590at 581.183 kb on + strand, within QEN71_RS02590at 581.183 kb on + strand, within QEN71_RS02590at 581.183 kb on + strand, within QEN71_RS02590at 581.183 kb on + strand, within QEN71_RS02590at 581.184 kb on - strand, within QEN71_RS02590at 581.262 kb on + strandat 581.262 kb on + strandat 581.262 kb on + strandat 581.262 kb on + strandat 581.262 kb on + strandat 581.263 kb on - strandat 581.263 kb on - strandat 581.263 kb on - strandat 581.348 kb on + strandat 581.348 kb on + strandat 581.348 kb on + strandat 581.348 kb on + strandat 581.348 kb on + strandat 581.348 kb on + strandat 581.349 kb on - strandat 581.349 kb on - strandat 581.349 kb on - strandat 581.349 kb on - strandat 581.349 kb on - strandat 581.349 kb on - strandat 581.361 kb on - strandat 581.361 kb on - strandat 581.362 kb on + strandat 581.363 kb on - strandat 581.363 kb on - strandat 581.370 kb on + strandat 581.370 kb on + strandat 581.370 kb on + strandat 581.370 kb on + strandat 581.371 kb on - strandat 581.371 kb on - strandat 581.371 kb on - strandat 581.371 kb on - strandat 581.371 kb on - strandat 581.371 kb on - strandat 581.441 kb on + strandat 581.505 kb on + strandat 581.505 kb on + strandat 581.506 kb on - strandat 581.760 kb on + strand, within QEN71_RS02595at 581.760 kb on + strand, within QEN71_RS02595at 581.760 kb on + strand, within QEN71_RS02595at 581.761 kb on - strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.815 kb on - strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.888 kb on + strand, within QEN71_RS02595at 581.889 kb on - strand, within QEN71_RS02595at 581.937 kb on + strand, within QEN71_RS02595at 582.036 kb on + strand, within QEN71_RS02595at 582.099 kb on + strand, within QEN71_RS02595at 582.100 kb on - strand, within QEN71_RS02595at 582.100 kb on - strand, within QEN71_RS02595at 582.333 kb on + strand, within QEN71_RS02595at 582.333 kb on + strand, within QEN71_RS02595at 582.334 kb on - strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.390 kb on + strand, within QEN71_RS02595at 582.391 kb on - strand, within QEN71_RS02595at 582.541 kb on + strandat 582.542 kb on - strandat 582.542 kb on - strandat 582.542 kb on - strandat 582.551 kb on - strandat 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.754 kb on + strand, within QEN71_RS02600at 582.754 kb on + strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.842 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.998 kb on + strand, within QEN71_RS02600at 582.998 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.084 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.119 kb on - strand, within QEN71_RS02600at 583.119 kb on - strand, within QEN71_RS02600at 583.256 kb on + strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.369 kb on + strandat 583.370 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
remove
580,616 + QEN71_RS02590 0.44 +0.3
580,616 + QEN71_RS02590 0.44 +0.4
580,616 + QEN71_RS02590 0.44 +1.0
580,616 + QEN71_RS02590 0.44 +0.4
580,616 + QEN71_RS02590 0.44 -1.9
580,616 + QEN71_RS02590 0.44 +0.2
580,616 + QEN71_RS02590 0.44 +1.0
580,616 + QEN71_RS02590 0.44 -0.3
580,617 - QEN71_RS02590 0.45 -0.4
580,617 - QEN71_RS02590 0.45 -0.5
580,617 - QEN71_RS02590 0.45 -0.3
580,617 - QEN71_RS02590 0.45 +0.4
580,715 + QEN71_RS02590 0.52 -2.9
580,715 + QEN71_RS02590 0.52 +0.2
580,715 + QEN71_RS02590 0.52 +0.6
580,716 - QEN71_RS02590 0.52 -2.0
580,716 - QEN71_RS02590 0.52 -1.1
580,844 + QEN71_RS02590 0.62 +1.3
580,844 + QEN71_RS02590 0.62 +0.5
580,844 + QEN71_RS02590 0.62 -0.3
580,845 - QEN71_RS02590 0.62 +1.4
580,845 - QEN71_RS02590 0.62 -1.2
580,845 - QEN71_RS02590 0.62 +1.2
580,845 - QEN71_RS02590 0.62 -0.4
580,845 - QEN71_RS02590 0.62 +0.3
580,845 - QEN71_RS02590 0.62 +0.5
580,845 - QEN71_RS02590 0.62 +0.1
580,845 - QEN71_RS02590 0.62 -1.0
581,015 + QEN71_RS02590 0.75 +0.0
581,015 + QEN71_RS02590 0.75 -0.5
581,015 + QEN71_RS02590 0.75 -2.1
581,015 + QEN71_RS02590 0.75 -0.3
581,015 + QEN71_RS02590 0.75 +1.0
581,015 + QEN71_RS02590 0.75 -0.8
581,015 + QEN71_RS02590 0.75 -1.5
581,016 - QEN71_RS02590 0.75 +0.1
581,016 - QEN71_RS02590 0.75 -1.7
581,016 - QEN71_RS02590 0.75 -1.8
581,016 - QEN71_RS02590 0.75 -0.7
581,016 - QEN71_RS02590 0.75 +1.8
581,081 + QEN71_RS02590 0.80 +0.3
581,081 + QEN71_RS02590 0.80 +0.5
581,081 + QEN71_RS02590 0.80 -0.2
581,081 + QEN71_RS02590 0.80 +0.4
581,082 - QEN71_RS02590 0.80 -0.1
581,082 - QEN71_RS02590 0.80 -0.1
581,082 - QEN71_RS02590 0.80 -0.2
581,096 + QEN71_RS02590 0.81 +0.9
581,097 - QEN71_RS02590 0.81 -0.6
581,097 - QEN71_RS02590 0.81 +0.2
581,097 - QEN71_RS02590 0.81 -1.4
581,183 + QEN71_RS02590 0.87 -1.7
581,183 + QEN71_RS02590 0.87 -0.6
581,183 + QEN71_RS02590 0.87 +0.1
581,183 + QEN71_RS02590 0.87 -0.2
581,184 - QEN71_RS02590 0.87 +2.1
581,262 + -0.7
581,262 + +0.0
581,262 + +0.7
581,262 + -0.8
581,262 + +0.2
581,263 - +0.1
581,263 - -0.9
581,263 - -1.3
581,348 + -1.1
581,348 + -0.2
581,348 + +0.0
581,348 + +0.5
581,348 + -0.2
581,348 + -0.0
581,349 - -1.3
581,349 - +0.2
581,349 - -0.2
581,349 - -0.2
581,349 - -0.1
581,349 - -0.7
581,361 - +1.4
581,361 - -1.8
581,362 + +0.0
581,363 - +0.2
581,363 - -2.3
581,370 + -2.6
581,370 + +0.0
581,370 + +0.7
581,370 + -1.5
581,371 - +0.4
581,371 - -1.0
581,371 - -0.1
581,371 - -0.2
581,371 - -1.3
581,371 - +0.4
581,441 + +0.8
581,505 + +0.5
581,505 + -4.0
581,506 - +1.1
581,760 + QEN71_RS02595 0.16 -0.3
581,760 + QEN71_RS02595 0.16 -0.6
581,760 + QEN71_RS02595 0.16 +1.4
581,761 - QEN71_RS02595 0.16 +0.8
581,808 + QEN71_RS02595 0.21 -0.8
581,808 + QEN71_RS02595 0.21 -0.3
581,808 + QEN71_RS02595 0.21 +0.6
581,809 - QEN71_RS02595 0.21 -0.2
581,809 - QEN71_RS02595 0.21 -2.5
581,809 - QEN71_RS02595 0.21 +1.1
581,814 + QEN71_RS02595 0.22 +0.8
581,814 + QEN71_RS02595 0.22 +0.7
581,814 + QEN71_RS02595 0.22 -0.2
581,814 + QEN71_RS02595 0.22 -2.1
581,815 - QEN71_RS02595 0.22 -0.3
581,855 + QEN71_RS02595 0.26 -0.2
581,855 + QEN71_RS02595 0.26 +0.3
581,855 + QEN71_RS02595 0.26 -0.0
581,855 + QEN71_RS02595 0.26 -0.2
581,856 - QEN71_RS02595 0.26 -0.8
581,856 - QEN71_RS02595 0.26 -1.2
581,856 - QEN71_RS02595 0.26 +1.5
581,856 - QEN71_RS02595 0.26 -2.4
581,856 - QEN71_RS02595 0.26 -1.0
581,856 - QEN71_RS02595 0.26 +0.5
581,856 - QEN71_RS02595 0.26 -0.1
581,856 - QEN71_RS02595 0.26 +0.5
581,856 - QEN71_RS02595 0.26 -1.3
581,888 + QEN71_RS02595 0.30 -1.2
581,889 - QEN71_RS02595 0.30 -2.7
581,937 + QEN71_RS02595 0.35 -0.9
582,036 + QEN71_RS02595 0.46 -0.5
582,099 + QEN71_RS02595 0.53 -0.3
582,100 - QEN71_RS02595 0.53 +0.5
582,100 - QEN71_RS02595 0.53 -1.9
582,333 + QEN71_RS02595 0.79 -1.8
582,333 + QEN71_RS02595 0.79 -2.4
582,334 - QEN71_RS02595 0.79 -0.9
582,381 + QEN71_RS02595 0.84 +0.7
582,381 + QEN71_RS02595 0.84 -1.7
582,381 + QEN71_RS02595 0.84 -0.4
582,390 + QEN71_RS02595 0.85 +0.2
582,391 - QEN71_RS02595 0.85 +2.8
582,541 + -0.1
582,542 - +0.7
582,542 - -0.1
582,542 - -0.2
582,551 - +0.7
582,696 - QEN71_RS02600 0.20 -2.0
582,696 - QEN71_RS02600 0.20 -1.0
582,696 - QEN71_RS02600 0.20 +1.8
582,696 - QEN71_RS02600 0.20 -2.1
582,754 + QEN71_RS02600 0.27 -0.5
582,754 + QEN71_RS02600 0.27 +0.2
582,755 - QEN71_RS02600 0.27 +0.2
582,755 - QEN71_RS02600 0.27 -1.1
582,755 - QEN71_RS02600 0.27 -0.9
582,755 - QEN71_RS02600 0.27 -0.0
582,761 + QEN71_RS02600 0.27 +1.1
582,761 + QEN71_RS02600 0.27 -2.3
582,761 + QEN71_RS02600 0.27 -0.0
582,761 + QEN71_RS02600 0.27 +1.3
582,761 + QEN71_RS02600 0.27 -1.0
582,762 - QEN71_RS02600 0.27 +1.5
582,762 - QEN71_RS02600 0.27 -0.1
582,762 - QEN71_RS02600 0.27 -0.3
582,762 - QEN71_RS02600 0.27 -0.3
582,762 - QEN71_RS02600 0.27 -1.2
582,842 + QEN71_RS02600 0.37 +0.8
582,941 + QEN71_RS02600 0.48 -1.2
582,941 + QEN71_RS02600 0.48 -0.3
582,941 + QEN71_RS02600 0.48 +0.0
582,941 + QEN71_RS02600 0.48 -0.1
582,941 + QEN71_RS02600 0.48 -0.2
582,942 - QEN71_RS02600 0.48 -0.5
582,942 - QEN71_RS02600 0.48 -0.5
582,942 - QEN71_RS02600 0.48 +0.7
582,998 + QEN71_RS02600 0.55 -0.0
582,998 + QEN71_RS02600 0.55 +1.1
583,043 + QEN71_RS02600 0.60 +0.6
583,043 + QEN71_RS02600 0.60 +1.4
583,043 + QEN71_RS02600 0.60 +0.1
583,043 + QEN71_RS02600 0.60 -0.1
583,044 - QEN71_RS02600 0.60 -0.0
583,044 - QEN71_RS02600 0.60 -0.3
583,044 - QEN71_RS02600 0.60 -1.2
583,044 - QEN71_RS02600 0.60 +0.5
583,084 + QEN71_RS02600 0.65 -1.6
583,118 + QEN71_RS02600 0.69 -0.8
583,118 + QEN71_RS02600 0.69 -1.0
583,118 + QEN71_RS02600 0.69 -0.7
583,119 - QEN71_RS02600 0.69 -0.8
583,119 - QEN71_RS02600 0.69 -0.2
583,256 + QEN71_RS02600 0.84 +0.2
583,257 - QEN71_RS02600 0.85 +0.2
583,257 - QEN71_RS02600 0.85 +0.8
583,257 - QEN71_RS02600 0.85 -1.5
583,369 + -0.7
583,370 - +2.1

Or see this region's nucleotide sequence