Experiment: Motility_outer_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02400 and QEN71_RS02405 are separated by 211 nucleotides QEN71_RS02405 and QEN71_RS02410 are separated by 71 nucleotides
QEN71_RS02400: QEN71_RS02400 - lipopolysaccharide heptosyltransferase II, at 537,118 to 538,143
_RS02400
QEN71_RS02405: QEN71_RS02405 - zinc-finger domain-containing protein, at 538,355 to 538,549
_RS02405
QEN71_RS02410: QEN71_RS02410 - branched-chain amino acid transaminase, at 538,621 to 539,544
_RS02410
Position (kb) 538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 538.170 kb on - strand at 538.215 kb on - strand at 538.215 kb on - strand at 538.215 kb on - strand at 538.215 kb on - strand at 538.215 kb on - strand at 538.215 kb on - strand at 538.223 kb on - strand at 538.223 kb on - strand at 538.223 kb on - strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.232 kb on + strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.233 kb on - strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.236 kb on + strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.237 kb on - strand at 538.273 kb on - strand at 538.392 kb on + strand, within QEN71_RS02405 at 538.392 kb on + strand, within QEN71_RS02405 at 538.392 kb on + strand, within QEN71_RS02405 at 538.393 kb on - strand, within QEN71_RS02405 at 538.393 kb on - strand, within QEN71_RS02405 at 538.393 kb on - strand, within QEN71_RS02405 at 538.393 kb on - strand, within QEN71_RS02405 at 538.407 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.491 kb on + strand, within QEN71_RS02405 at 538.492 kb on - strand, within QEN71_RS02405 at 538.492 kb on - strand, within QEN71_RS02405 at 538.492 kb on - strand, within QEN71_RS02405 at 538.549 kb on + strand at 538.549 kb on + strand at 538.550 kb on - strand at 538.550 kb on - strand at 538.550 kb on - strand at 538.566 kb on + strand at 538.566 kb on + strand at 538.566 kb on + strand at 538.566 kb on + strand at 538.566 kb on + strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.567 kb on - strand at 538.646 kb on + strand at 538.646 kb on + strand at 538.647 kb on - strand at 538.800 kb on + strand, within QEN71_RS02410 at 538.800 kb on + strand, within QEN71_RS02410 at 538.800 kb on + strand, within QEN71_RS02410 at 538.800 kb on + strand, within QEN71_RS02410 at 538.800 kb on + strand, within QEN71_RS02410 at 538.800 kb on + strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.801 kb on - strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.802 kb on + strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.803 kb on - strand, within QEN71_RS02410 at 538.873 kb on - strand, within QEN71_RS02410 at 538.916 kb on + strand, within QEN71_RS02410 at 538.916 kb on + strand, within QEN71_RS02410 at 538.916 kb on + strand, within QEN71_RS02410 at 538.916 kb on + strand, within QEN71_RS02410 at 538.916 kb on + strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.917 kb on - strand, within QEN71_RS02410 at 538.970 kb on + strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 538.971 kb on - strand, within QEN71_RS02410 at 539.004 kb on - strand, within QEN71_RS02410 at 539.048 kb on + strand, within QEN71_RS02410 at 539.048 kb on + strand, within QEN71_RS02410 at 539.048 kb on + strand, within QEN71_RS02410 at 539.049 kb on - strand, within QEN71_RS02410 at 539.049 kb on - strand, within QEN71_RS02410 at 539.153 kb on + strand, within QEN71_RS02410 at 539.153 kb on + strand, within QEN71_RS02410 at 539.154 kb on - strand, within QEN71_RS02410 at 539.252 kb on + strand, within QEN71_RS02410 at 539.252 kb on + strand, within QEN71_RS02410 at 539.252 kb on + strand, within QEN71_RS02410 at 539.252 kb on + strand, within QEN71_RS02410 at 539.252 kb on + strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.253 kb on - strand, within QEN71_RS02410 at 539.414 kb on + strand, within QEN71_RS02410 at 539.415 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.423 kb on - strand, within QEN71_RS02410 at 539.447 kb on + strand, within QEN71_RS02410 at 539.447 kb on + strand, within QEN71_RS02410 at 539.457 kb on + strand at 539.457 kb on + strand at 539.457 kb on + strand at 539.458 kb on - strand at 539.458 kb on - strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.544 kb on + strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand at 539.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_outer_sample remove 538,170 - -0.5 538,215 - +0.6 538,215 - -0.4 538,215 - -0.5 538,215 - -0.3 538,215 - -0.8 538,215 - -0.8 538,223 - -0.2 538,223 - +0.9 538,223 - +0.5 538,232 + -1.5 538,232 + -2.0 538,232 + -0.2 538,232 + -2.7 538,232 + -0.2 538,232 + -2.1 538,232 + -2.0 538,233 - +0.2 538,233 - +0.0 538,233 - +0.5 538,233 - +0.4 538,233 - -0.3 538,233 - +0.2 538,233 - -0.5 538,233 - +2.0 538,233 - -1.3 538,233 - -0.0 538,233 - -0.0 538,233 - +1.3 538,233 - -1.1 538,233 - +0.4 538,233 - -0.3 538,233 - -1.9 538,233 - -0.1 538,236 + -1.6 538,236 + -2.1 538,236 + -2.0 538,236 + -0.5 538,236 + -0.5 538,236 + -1.5 538,236 + -1.6 538,236 + -1.3 538,236 + -2.7 538,237 - +0.3 538,237 - +0.3 538,237 - -2.6 538,237 - -0.7 538,237 - -0.2 538,237 - +0.7 538,237 - -3.6 538,237 - +0.1 538,237 - +0.2 538,237 - -0.7 538,237 - +0.5 538,237 - +0.2 538,237 - -0.8 538,237 - +0.8 538,237 - -0.9 538,273 - +0.8 538,392 + QEN71_RS02405 0.19 -2.0 538,392 + QEN71_RS02405 0.19 -1.5 538,392 + QEN71_RS02405 0.19 -2.3 538,393 - QEN71_RS02405 0.19 +0.6 538,393 - QEN71_RS02405 0.19 -0.3 538,393 - QEN71_RS02405 0.19 +1.4 538,393 - QEN71_RS02405 0.19 -1.3 538,407 + QEN71_RS02405 0.27 -2.2 538,491 + QEN71_RS02405 0.70 +0.8 538,491 + QEN71_RS02405 0.70 -2.3 538,491 + QEN71_RS02405 0.70 -3.1 538,491 + QEN71_RS02405 0.70 -1.0 538,491 + QEN71_RS02405 0.70 -3.8 538,491 + QEN71_RS02405 0.70 -1.0 538,492 - QEN71_RS02405 0.70 -0.1 538,492 - QEN71_RS02405 0.70 -0.6 538,492 - QEN71_RS02405 0.70 -0.6 538,549 + -1.3 538,549 + -0.5 538,550 - +1.2 538,550 - -1.0 538,550 - -0.6 538,566 + -2.6 538,566 + -1.9 538,566 + -2.8 538,566 + -0.8 538,566 + -3.1 538,567 - -1.1 538,567 - +0.7 538,567 - +0.4 538,567 - +0.9 538,567 - +0.5 538,567 - -0.1 538,567 - -0.7 538,567 - +0.3 538,567 - -0.5 538,567 - +1.1 538,567 - -0.3 538,567 - -0.2 538,567 - +0.3 538,567 - -0.4 538,646 + -3.0 538,646 + -1.6 538,647 - +0.3 538,800 + QEN71_RS02410 0.19 -0.5 538,800 + QEN71_RS02410 0.19 -0.8 538,800 + QEN71_RS02410 0.19 -3.7 538,800 + QEN71_RS02410 0.19 -2.6 538,800 + QEN71_RS02410 0.19 -0.8 538,800 + QEN71_RS02410 0.19 -3.2 538,801 - QEN71_RS02410 0.19 -0.1 538,801 - QEN71_RS02410 0.19 -0.6 538,801 - QEN71_RS02410 0.19 +1.5 538,801 - QEN71_RS02410 0.19 -2.0 538,801 - QEN71_RS02410 0.19 +0.0 538,801 - QEN71_RS02410 0.19 -2.0 538,801 - QEN71_RS02410 0.19 +1.1 538,801 - QEN71_RS02410 0.19 -1.7 538,801 - QEN71_RS02410 0.19 +0.0 538,801 - QEN71_RS02410 0.19 +0.3 538,801 - QEN71_RS02410 0.19 -0.4 538,801 - QEN71_RS02410 0.19 -0.4 538,801 - QEN71_RS02410 0.19 -0.2 538,801 - QEN71_RS02410 0.19 +0.9 538,801 - QEN71_RS02410 0.19 -0.4 538,801 - QEN71_RS02410 0.19 -0.2 538,801 - QEN71_RS02410 0.19 -0.5 538,802 + QEN71_RS02410 0.20 -0.9 538,802 + QEN71_RS02410 0.20 -0.2 538,802 + QEN71_RS02410 0.20 -2.8 538,802 + QEN71_RS02410 0.20 -3.1 538,802 + QEN71_RS02410 0.20 -0.8 538,802 + QEN71_RS02410 0.20 +0.3 538,802 + QEN71_RS02410 0.20 -0.2 538,802 + QEN71_RS02410 0.20 -2.7 538,803 - QEN71_RS02410 0.20 -0.2 538,803 - QEN71_RS02410 0.20 -2.3 538,803 - QEN71_RS02410 0.20 +0.9 538,803 - QEN71_RS02410 0.20 -0.6 538,803 - QEN71_RS02410 0.20 -0.6 538,803 - QEN71_RS02410 0.20 -1.6 538,803 - QEN71_RS02410 0.20 +0.7 538,803 - QEN71_RS02410 0.20 -0.8 538,873 - QEN71_RS02410 0.27 -1.0 538,916 + QEN71_RS02410 0.32 -2.7 538,916 + QEN71_RS02410 0.32 -2.6 538,916 + QEN71_RS02410 0.32 -1.8 538,916 + QEN71_RS02410 0.32 -4.4 538,916 + QEN71_RS02410 0.32 -0.2 538,917 - QEN71_RS02410 0.32 -0.7 538,917 - QEN71_RS02410 0.32 +1.2 538,917 - QEN71_RS02410 0.32 -0.0 538,917 - QEN71_RS02410 0.32 -1.5 538,917 - QEN71_RS02410 0.32 -0.8 538,917 - QEN71_RS02410 0.32 +0.1 538,917 - QEN71_RS02410 0.32 -0.0 538,917 - QEN71_RS02410 0.32 -0.6 538,917 - QEN71_RS02410 0.32 +0.7 538,917 - QEN71_RS02410 0.32 +0.8 538,917 - QEN71_RS02410 0.32 -1.4 538,917 - QEN71_RS02410 0.32 -0.0 538,917 - QEN71_RS02410 0.32 +0.2 538,970 + QEN71_RS02410 0.38 -1.6 538,971 - QEN71_RS02410 0.38 -0.8 538,971 - QEN71_RS02410 0.38 -1.5 538,971 - QEN71_RS02410 0.38 -0.6 538,971 - QEN71_RS02410 0.38 -1.0 538,971 - QEN71_RS02410 0.38 +1.2 538,971 - QEN71_RS02410 0.38 -1.7 539,004 - QEN71_RS02410 0.41 -1.0 539,048 + QEN71_RS02410 0.46 -2.0 539,048 + QEN71_RS02410 0.46 -1.5 539,048 + QEN71_RS02410 0.46 -0.2 539,049 - QEN71_RS02410 0.46 -1.1 539,049 - QEN71_RS02410 0.46 -0.8 539,153 + QEN71_RS02410 0.58 -1.9 539,153 + QEN71_RS02410 0.58 -2.1 539,154 - QEN71_RS02410 0.58 -0.5 539,252 + QEN71_RS02410 0.68 -1.3 539,252 + QEN71_RS02410 0.68 -0.2 539,252 + QEN71_RS02410 0.68 -1.3 539,252 + QEN71_RS02410 0.68 -0.5 539,252 + QEN71_RS02410 0.68 -0.5 539,253 - QEN71_RS02410 0.68 -0.1 539,253 - QEN71_RS02410 0.68 +0.1 539,253 - QEN71_RS02410 0.68 -0.4 539,253 - QEN71_RS02410 0.68 +0.1 539,253 - QEN71_RS02410 0.68 +0.0 539,253 - QEN71_RS02410 0.68 +0.8 539,253 - QEN71_RS02410 0.68 -1.5 539,253 - QEN71_RS02410 0.68 -1.2 539,414 + QEN71_RS02410 0.86 -3.3 539,415 - QEN71_RS02410 0.86 -0.6 539,423 - QEN71_RS02410 0.87 -0.4 539,423 - QEN71_RS02410 0.87 -1.2 539,423 - QEN71_RS02410 0.87 +0.6 539,423 - QEN71_RS02410 0.87 +0.9 539,423 - QEN71_RS02410 0.87 -0.8 539,423 - QEN71_RS02410 0.87 +0.7 539,423 - QEN71_RS02410 0.87 +0.9 539,447 + QEN71_RS02410 0.89 -2.6 539,447 + QEN71_RS02410 0.89 -3.0 539,457 + -2.0 539,457 + -2.1 539,457 + -2.1 539,458 - -0.6 539,458 - +1.3 539,544 + -2.0 539,544 + -0.2 539,544 + -3.3 539,544 + -0.5 539,544 + -1.2 539,544 + -3.0 539,544 + -1.2 539,544 + +0.1 539,544 + -3.3 539,544 + -2.4 539,545 - +0.2 539,545 - -1.5 539,545 - +1.1 539,545 - +0.6 539,545 - +0.4 539,545 - +1.7 539,545 - -1.2 539,545 - +0.9 539,545 - -0.3 539,545 - -1.5 539,545 - +1.0 539,545 - -1.0 539,545 - -0.5 539,545 - +0.0 539,545 - -1.0 539,545 - +0.3 539,545 - +0.2 539,545 - +1.5 539,545 - +0.0 539,545 - -0.2 539,545 - +0.4
Or see this region's nucleotide sequence