Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02175

Experiment: Motility_outer_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02170 and QEN71_RS02175 are separated by 36 nucleotidesQEN71_RS02175 and QEN71_RS02180 are separated by 791 nucleotides QEN71_RS02170: QEN71_RS02170 - apolipoprotein N-acyltransferase, at 487,106 to 488,782 _RS02170 QEN71_RS02175: QEN71_RS02175 - HlyC/CorC family transporter, at 488,819 to 489,715 _RS02175 QEN71_RS02180: QEN71_RS02180 - gamma-glutamylcyclotransferase, at 490,507 to 491,160 _RS02180 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1 2at 489.022 kb on - strand, within QEN71_RS02175at 489.022 kb on - strand, within QEN71_RS02175at 489.130 kb on - strand, within QEN71_RS02175at 489.179 kb on - strand, within QEN71_RS02175at 489.179 kb on - strand, within QEN71_RS02175at 489.334 kb on - strand, within QEN71_RS02175at 489.334 kb on - strand, within QEN71_RS02175at 489.337 kb on - strand, within QEN71_RS02175at 489.394 kb on - strand, within QEN71_RS02175at 489.430 kb on - strand, within QEN71_RS02175at 489.430 kb on - strand, within QEN71_RS02175at 489.430 kb on - strand, within QEN71_RS02175at 489.430 kb on - strand, within QEN71_RS02175at 489.430 kb on - strand, within QEN71_RS02175at 489.763 kb on + strandat 489.763 kb on + strandat 489.763 kb on + strandat 489.763 kb on + strandat 489.764 kb on - strandat 489.764 kb on - strandat 489.764 kb on - strandat 489.764 kb on - strandat 489.764 kb on - strandat 489.822 kb on + strandat 489.822 kb on + strandat 489.823 kb on - strandat 489.823 kb on - strandat 489.828 kb on - strandat 489.835 kb on - strandat 489.835 kb on - strandat 489.835 kb on - strandat 489.881 kb on + strandat 489.881 kb on + strandat 489.881 kb on + strandat 489.881 kb on + strandat 489.881 kb on + strandat 489.882 kb on - strandat 489.882 kb on - strandat 489.882 kb on - strandat 489.882 kb on - strandat 489.882 kb on - strandat 489.882 kb on - strandat 489.885 kb on - strandat 489.957 kb on - strandat 489.965 kb on - strandat 489.968 kb on - strandat 490.075 kb on - strandat 490.075 kb on - strandat 490.075 kb on - strandat 490.091 kb on - strandat 490.091 kb on - strandat 490.116 kb on + strandat 490.116 kb on + strandat 490.116 kb on + strandat 490.219 kb on + strandat 490.219 kb on + strandat 490.219 kb on + strandat 490.219 kb on + strandat 490.219 kb on + strandat 490.276 kb on + strandat 490.441 kb on + strandat 490.522 kb on + strandat 490.589 kb on + strand, within QEN71_RS02180at 490.589 kb on + strand, within QEN71_RS02180at 490.589 kb on + strand, within QEN71_RS02180at 490.589 kb on + strand, within QEN71_RS02180at 490.589 kb on + strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.590 kb on - strand, within QEN71_RS02180at 490.599 kb on + strand, within QEN71_RS02180at 490.599 kb on + strand, within QEN71_RS02180at 490.599 kb on + strand, within QEN71_RS02180at 490.599 kb on + strand, within QEN71_RS02180at 490.599 kb on + strand, within QEN71_RS02180at 490.600 kb on - strand, within QEN71_RS02180at 490.600 kb on - strand, within QEN71_RS02180at 490.666 kb on - strand, within QEN71_RS02180at 490.666 kb on - strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.667 kb on + strand, within QEN71_RS02180at 490.668 kb on - strand, within QEN71_RS02180at 490.668 kb on - strand, within QEN71_RS02180

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_outer_sample
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489,022 - QEN71_RS02175 0.23 -2.6
489,022 - QEN71_RS02175 0.23 -0.0
489,130 - QEN71_RS02175 0.35 +1.4
489,179 - QEN71_RS02175 0.40 -1.7
489,179 - QEN71_RS02175 0.40 -0.5
489,334 - QEN71_RS02175 0.57 -0.8
489,334 - QEN71_RS02175 0.57 -0.7
489,337 - QEN71_RS02175 0.58 -0.7
489,394 - QEN71_RS02175 0.64 -0.7
489,430 - QEN71_RS02175 0.68 -1.9
489,430 - QEN71_RS02175 0.68 -1.9
489,430 - QEN71_RS02175 0.68 +0.2
489,430 - QEN71_RS02175 0.68 -1.4
489,430 - QEN71_RS02175 0.68 -0.5
489,763 + -1.0
489,763 + -0.2
489,763 + +0.5
489,763 + -1.6
489,764 - +0.3
489,764 - -0.0
489,764 - -0.7
489,764 - -1.4
489,764 - -2.7
489,822 + +1.4
489,822 + +0.2
489,823 - +1.3
489,823 - +2.5
489,828 - -0.0
489,835 - -2.4
489,835 - +1.1
489,835 - -1.2
489,881 + +0.1
489,881 + +0.1
489,881 + +0.7
489,881 + -0.9
489,881 + +0.5
489,882 - -0.2
489,882 - +0.4
489,882 - -0.0
489,882 - +2.5
489,882 - +0.3
489,882 - -0.7
489,885 - +0.3
489,957 - +0.0
489,965 - +0.5
489,968 - -0.3
490,075 - -1.4
490,075 - -0.6
490,075 - -0.2
490,091 - +1.1
490,091 - +0.0
490,116 + +0.3
490,116 + -0.4
490,116 + +1.0
490,219 + -1.3
490,219 + +0.8
490,219 + -0.7
490,219 + +1.2
490,219 + +0.4
490,276 + -1.3
490,441 + +0.2
490,522 + -1.0
490,589 + QEN71_RS02180 0.13 +1.2
490,589 + QEN71_RS02180 0.13 +0.2
490,589 + QEN71_RS02180 0.13 +1.4
490,589 + QEN71_RS02180 0.13 -0.7
490,589 + QEN71_RS02180 0.13 +1.2
490,590 - QEN71_RS02180 0.13 -0.3
490,590 - QEN71_RS02180 0.13 -0.0
490,590 - QEN71_RS02180 0.13 -1.0
490,590 - QEN71_RS02180 0.13 +1.1
490,590 - QEN71_RS02180 0.13 +2.1
490,590 - QEN71_RS02180 0.13 -0.4
490,590 - QEN71_RS02180 0.13 -1.0
490,590 - QEN71_RS02180 0.13 -1.7
490,599 + QEN71_RS02180 0.14 -0.6
490,599 + QEN71_RS02180 0.14 -1.7
490,599 + QEN71_RS02180 0.14 +1.4
490,599 + QEN71_RS02180 0.14 +0.8
490,599 + QEN71_RS02180 0.14 +0.2
490,600 - QEN71_RS02180 0.14 -0.7
490,600 - QEN71_RS02180 0.14 -0.9
490,666 - QEN71_RS02180 0.24 +0.5
490,666 - QEN71_RS02180 0.24 -0.0
490,667 + QEN71_RS02180 0.24 -0.2
490,667 + QEN71_RS02180 0.24 -1.6
490,667 + QEN71_RS02180 0.24 +1.3
490,667 + QEN71_RS02180 0.24 +0.5
490,667 + QEN71_RS02180 0.24 -1.0
490,667 + QEN71_RS02180 0.24 -0.5
490,668 - QEN71_RS02180 0.25 -0.2
490,668 - QEN71_RS02180 0.25 -1.0

Or see this region's nucleotide sequence