Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04030

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
4,516,772	+		MIT1002_04028	0.71	-1.0
4,516,780	-		MIT1002_04028	0.72	-0.4
4,516,876	-		MIT1002_04028	0.79	-0.9
4,516,882	+		MIT1002_04028	0.80	-0.3
4,516,890	-		MIT1002_04028	0.81	-0.9
4,516,890	-		MIT1002_04028	0.81	-1.3
4,516,962	+		MIT1002_04028	0.87	+0.1
4,516,962	+		MIT1002_04028	0.87	-0.9
4,516,970	-		MIT1002_04028	0.87	-2.0
4,516,970	-		MIT1002_04028	0.87	-0.3
4,517,008	-				+1.3
4,517,015	+				-2.8
4,517,031	+				-1.0
4,517,044	-				-2.8
4,517,051	+				-0.5
4,517,074	+				+0.1
4,517,194	-		MIT1002_04029	0.12	-0.1
4,517,230	-		MIT1002_04029	0.18	+0.2
4,517,273	-		MIT1002_04029	0.26	-1.1
4,517,283	-		MIT1002_04029	0.28	+0.8
4,517,307	-		MIT1002_04029	0.33	-2.3
4,517,366	-		MIT1002_04029	0.44	-1.7
4,517,387	-		MIT1002_04029	0.47	+1.1
4,517,389	+		MIT1002_04029	0.48	-1.5
4,517,397	-		MIT1002_04029	0.49	-0.9
4,517,467	-		MIT1002_04029	0.62	-0.7
4,517,550	-		MIT1002_04029	0.78	-0.3
4,517,573	+		MIT1002_04029	0.82	-0.7
4,517,668	-				-1.9
4,517,735	+		MIT1002_04030	0.10	+1.1
4,517,735	+		MIT1002_04030	0.10	-0.3
4,517,743	+		MIT1002_04030	0.11	-3.1
4,517,771	+		MIT1002_04030	0.15	-3.3
4,517,780	+		MIT1002_04030	0.17	-1.6
4,517,780	+		MIT1002_04030	0.17	-2.4
4,517,788	-		MIT1002_04030	0.18	-2.3
4,517,788	-		MIT1002_04030	0.18	+1.1
4,517,851	+		MIT1002_04030	0.27	-1.2
4,517,891	-		MIT1002_04030	0.32	-2.0
4,517,891	-		MIT1002_04030	0.32	-1.5
4,517,953	+		MIT1002_04030	0.41	-0.4
4,517,960	-		MIT1002_04030	0.42	-2.5
4,518,022	-		MIT1002_04030	0.51	-1.4
4,518,042	+		MIT1002_04030	0.54	-2.9
4,518,088	+		MIT1002_04030	0.60	-0.7
4,518,166	-		MIT1002_04030	0.71	-2.2
4,518,179	-		MIT1002_04030	0.73	-1.9
4,518,202	-		MIT1002_04030	0.76	+0.8
4,518,205	+		MIT1002_04030	0.77	-2.3
4,518,205	+		MIT1002_04030	0.77	-1.9
4,518,225	-		MIT1002_04030	0.80	+0.3
4,518,256	-		MIT1002_04030	0.84	-1.1
4,518,292	+		MIT1002_04030	0.89	-2.8
4,518,292	+		MIT1002_04030	0.89	-2.9
4,518,292	+		MIT1002_04030	0.89	-0.5
4,518,292	+		MIT1002_04030	0.89	+0.2
4,518,293	+		MIT1002_04030	0.89	-2.2
4,518,300	-				+0.7
4,518,323	+				-1.2
4,518,501	+		MIT1002_04031	0.42	+1.1
4,518,509	-		MIT1002_04031	0.46	-1.3
4,518,536	+		MIT1002_04031	0.59	-1.4
4,518,546	+		MIT1002_04031	0.63	-0.2
4,518,552	-		MIT1002_04031	0.66	-1.1
4,518,590	+		MIT1002_04031	0.84	-0.2
4,518,623	+				-4.0
4,518,635	+				-1.1
4,518,635	+				-2.5
4,518,643	-				+0.6
4,518,674	+				-3.8
4,518,677	-				-0.3
4,518,790	+		MIT1002_04032	0.17	-1.2
4,518,790	+		MIT1002_04032	0.17	-0.8
4,518,791	+		MIT1002_04032	0.17	-1.8
4,518,799	-		MIT1002_04032	0.18	+0.8
4,518,814	-		MIT1002_04032	0.20	-3.1
4,518,890	-		MIT1002_04032	0.28	+0.7
4,518,892	-		MIT1002_04032	0.28	-2.8
4,518,933	+		MIT1002_04032	0.33	-1.5
4,518,943	+		MIT1002_04032	0.34	-2.8
4,518,943	+		MIT1002_04032	0.34	+0.6
4,518,951	-		MIT1002_04032	0.35	-2.8
4,518,951	-		MIT1002_04032	0.35	-2.3
4,518,951	-		MIT1002_04032	0.35	-0.9
4,518,951	-		MIT1002_04032	0.35	+0.5
4,518,951	-		MIT1002_04032	0.35	-0.3
4,518,951	-		MIT1002_04032	0.35	-0.2
4,518,958	-		MIT1002_04032	0.36	-2.3
4,518,978	+		MIT1002_04032	0.38	-2.2
4,519,000	+		MIT1002_04032	0.40	-0.7
4,519,003	-		MIT1002_04032	0.41	-1.8
4,519,008	-		MIT1002_04032	0.41	-3.3
4,519,008	-		MIT1002_04032	0.41	-1.4
4,519,027	-		MIT1002_04032	0.44	-1.9
4,519,045	+		MIT1002_04032	0.46	-2.7
4,519,108	+		MIT1002_04032	0.53	-0.4
4,519,201	-		MIT1002_04032	0.63	-0.2
4,519,237	+		MIT1002_04032	0.67	-2.0
4,519,245	-		MIT1002_04032	0.68	-2.3
4,519,247	+		MIT1002_04032	0.68	-1.7
4,519,255	-		MIT1002_04032	0.69	-3.7
4,519,255	-		MIT1002_04032	0.69	+0.2
4,519,271	+		MIT1002_04032	0.71	-2.7
4,519,271	+		MIT1002_04032	0.71	-4.4
4,519,284	+		MIT1002_04032	0.72	-3.4
4,519,284	+		MIT1002_04032	0.72	-1.1
4,519,343	+		MIT1002_04032	0.79	-1.6
4,519,351	-		MIT1002_04032	0.80	-1.7