Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04024 and MIT1002_04025 are separated by 79 nucleotides MIT1002_04025 and MIT1002_04026 are separated by 1 nucleotides MIT1002_04026 and MIT1002_04027 overlap by 4 nucleotides
MIT1002_04024: MIT1002_04024 - Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase precursor, at 4,512,462 to 4,513,688
_04024
MIT1002_04025: MIT1002_04025 - TDP-fucosamine acetyltransferase, at 4,513,768 to 4,514,355
_04025
MIT1002_04026: MIT1002_04026 - BsSco, at 4,514,357 to 4,515,001
_04026
MIT1002_04027: MIT1002_04027 - Protoheme IX farnesyltransferase, at 4,514,998 to 4,515,915
_04027
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 4512.799 kb on + strand, within MIT1002_04024 at 4512.817 kb on + strand, within MIT1002_04024 at 4512.820 kb on - strand, within MIT1002_04024 at 4512.820 kb on - strand, within MIT1002_04024 at 4512.865 kb on - strand, within MIT1002_04024 at 4512.867 kb on - strand, within MIT1002_04024 at 4512.930 kb on + strand, within MIT1002_04024 at 4512.984 kb on - strand, within MIT1002_04024 at 4512.997 kb on + strand, within MIT1002_04024 at 4513.005 kb on - strand, within MIT1002_04024 at 4513.005 kb on - strand, within MIT1002_04024 at 4513.061 kb on + strand, within MIT1002_04024 at 4513.074 kb on - strand, within MIT1002_04024 at 4513.102 kb on + strand, within MIT1002_04024 at 4513.131 kb on + strand, within MIT1002_04024 at 4513.215 kb on + strand, within MIT1002_04024 at 4513.217 kb on + strand, within MIT1002_04024 at 4513.220 kb on - strand, within MIT1002_04024 at 4513.248 kb on + strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.249 kb on - strand, within MIT1002_04024 at 4513.256 kb on - strand, within MIT1002_04024 at 4513.292 kb on - strand, within MIT1002_04024 at 4513.292 kb on - strand, within MIT1002_04024 at 4513.294 kb on + strand, within MIT1002_04024 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.370 kb on + strand, within MIT1002_04024 at 4513.390 kb on - strand, within MIT1002_04024 at 4513.481 kb on + strand, within MIT1002_04024 at 4513.595 kb on - strand at 4513.597 kb on + strand at 4513.639 kb on + strand at 4513.640 kb on + strand at 4513.678 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.683 kb on + strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.691 kb on - strand at 4513.823 kb on + strand at 4513.927 kb on - strand, within MIT1002_04025 at 4513.929 kb on + strand, within MIT1002_04025 at 4514.038 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.048 kb on + strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.056 kb on - strand, within MIT1002_04025 at 4514.071 kb on - strand, within MIT1002_04025 at 4514.086 kb on + strand, within MIT1002_04025 at 4514.093 kb on - strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.101 kb on + strand, within MIT1002_04025 at 4514.130 kb on - strand, within MIT1002_04025 at 4514.141 kb on + strand, within MIT1002_04025 at 4514.151 kb on - strand, within MIT1002_04025 at 4514.291 kb on - strand, within MIT1002_04025 at 4514.316 kb on - strand at 4514.368 kb on + strand at 4514.420 kb on + strand at 4514.420 kb on - strand at 4514.472 kb on - strand, within MIT1002_04026 at 4514.493 kb on - strand, within MIT1002_04026 at 4514.595 kb on - strand, within MIT1002_04026 at 4514.611 kb on + strand, within MIT1002_04026 at 4514.630 kb on + strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.730 kb on - strand, within MIT1002_04026 at 4514.732 kb on + strand, within MIT1002_04026 at 4514.732 kb on - strand, within MIT1002_04026 at 4514.836 kb on - strand, within MIT1002_04026 at 4514.880 kb on + strand, within MIT1002_04026 at 4514.883 kb on - strand, within MIT1002_04026 at 4514.886 kb on + strand, within MIT1002_04026 at 4514.928 kb on + strand, within MIT1002_04026 at 4514.933 kb on - strand, within MIT1002_04026 at 4515.004 kb on + strand at 4515.012 kb on - strand at 4515.150 kb on + strand, within MIT1002_04027 at 4515.150 kb on + strand, within MIT1002_04027 at 4515.159 kb on - strand, within MIT1002_04027 at 4515.186 kb on + strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.194 kb on - strand, within MIT1002_04027 at 4515.227 kb on + strand, within MIT1002_04027 at 4515.232 kb on - strand, within MIT1002_04027 at 4515.240 kb on - strand, within MIT1002_04027 at 4515.255 kb on + strand, within MIT1002_04027 at 4515.255 kb on + strand, within MIT1002_04027 at 4515.269 kb on - strand, within MIT1002_04027 at 4515.271 kb on - strand, within MIT1002_04027
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 4,512,799 + MIT1002_04024 0.27 -1.6 4,512,817 + MIT1002_04024 0.29 -2.6 4,512,820 - MIT1002_04024 0.29 -2.6 4,512,820 - MIT1002_04024 0.29 -2.4 4,512,865 - MIT1002_04024 0.33 +1.7 4,512,867 - MIT1002_04024 0.33 -1.3 4,512,930 + MIT1002_04024 0.38 +0.5 4,512,984 - MIT1002_04024 0.43 -2.4 4,512,997 + MIT1002_04024 0.44 +0.3 4,513,005 - MIT1002_04024 0.44 +1.3 4,513,005 - MIT1002_04024 0.44 -0.7 4,513,061 + MIT1002_04024 0.49 +0.3 4,513,074 - MIT1002_04024 0.50 +0.8 4,513,102 + MIT1002_04024 0.52 -2.2 4,513,131 + MIT1002_04024 0.55 -1.5 4,513,215 + MIT1002_04024 0.61 -1.3 4,513,217 + MIT1002_04024 0.62 -1.4 4,513,220 - MIT1002_04024 0.62 +0.3 4,513,248 + MIT1002_04024 0.64 +0.7 4,513,249 - MIT1002_04024 0.64 -1.4 4,513,249 - MIT1002_04024 0.64 +0.3 4,513,249 - MIT1002_04024 0.64 -0.6 4,513,256 - MIT1002_04024 0.65 +0.0 4,513,292 - MIT1002_04024 0.68 -1.9 4,513,292 - MIT1002_04024 0.68 +0.1 4,513,294 + MIT1002_04024 0.68 +0.7 4,513,370 + MIT1002_04024 0.74 +0.2 4,513,370 + MIT1002_04024 0.74 +1.2 4,513,390 - MIT1002_04024 0.76 -0.9 4,513,481 + MIT1002_04024 0.83 -0.3 4,513,595 - +0.8 4,513,597 + -1.3 4,513,639 + -0.4 4,513,640 + -3.0 4,513,678 + +0.1 4,513,683 + -1.1 4,513,683 + -0.8 4,513,683 + -1.7 4,513,691 - -2.6 4,513,691 - +0.2 4,513,691 - +0.3 4,513,691 - +0.3 4,513,691 - +1.2 4,513,691 - -1.5 4,513,691 - +1.7 4,513,823 + -1.5 4,513,927 - MIT1002_04025 0.27 -0.8 4,513,929 + MIT1002_04025 0.27 +0.2 4,514,038 + MIT1002_04025 0.46 -0.2 4,514,048 + MIT1002_04025 0.48 -0.9 4,514,048 + MIT1002_04025 0.48 +6.7 4,514,048 + MIT1002_04025 0.48 +0.8 4,514,048 + MIT1002_04025 0.48 +1.3 4,514,048 + MIT1002_04025 0.48 +0.1 4,514,048 + MIT1002_04025 0.48 -0.2 4,514,048 + MIT1002_04025 0.48 +1.1 4,514,056 - MIT1002_04025 0.49 +1.9 4,514,056 - MIT1002_04025 0.49 -1.1 4,514,056 - MIT1002_04025 0.49 +0.0 4,514,056 - MIT1002_04025 0.49 +0.1 4,514,056 - MIT1002_04025 0.49 +0.9 4,514,071 - MIT1002_04025 0.52 -2.8 4,514,086 + MIT1002_04025 0.54 +3.5 4,514,093 - MIT1002_04025 0.55 -0.3 4,514,101 + MIT1002_04025 0.57 +0.2 4,514,101 + MIT1002_04025 0.57 -1.2 4,514,130 - MIT1002_04025 0.62 +0.4 4,514,141 + MIT1002_04025 0.63 +0.3 4,514,151 - MIT1002_04025 0.65 -0.9 4,514,291 - MIT1002_04025 0.89 -0.7 4,514,316 - -1.3 4,514,368 + -2.3 4,514,420 + -0.8 4,514,420 - -1.6 4,514,472 - MIT1002_04026 0.18 -0.9 4,514,493 - MIT1002_04026 0.21 -1.5 4,514,595 - MIT1002_04026 0.37 -1.8 4,514,611 + MIT1002_04026 0.39 -1.4 4,514,630 + MIT1002_04026 0.42 -0.1 4,514,730 - MIT1002_04026 0.58 -0.1 4,514,730 - MIT1002_04026 0.58 -0.7 4,514,730 - MIT1002_04026 0.58 -2.1 4,514,730 - MIT1002_04026 0.58 -1.5 4,514,730 - MIT1002_04026 0.58 -1.3 4,514,732 + MIT1002_04026 0.58 -2.6 4,514,732 - MIT1002_04026 0.58 +0.5 4,514,836 - MIT1002_04026 0.74 +1.1 4,514,880 + MIT1002_04026 0.81 -0.9 4,514,883 - MIT1002_04026 0.82 -0.9 4,514,886 + MIT1002_04026 0.82 -1.4 4,514,928 + MIT1002_04026 0.89 -1.6 4,514,933 - MIT1002_04026 0.89 -2.4 4,515,004 + -0.7 4,515,012 - +0.5 4,515,150 + MIT1002_04027 0.17 -2.8 4,515,150 + MIT1002_04027 0.17 +1.1 4,515,159 - MIT1002_04027 0.18 -3.0 4,515,186 + MIT1002_04027 0.20 -3.0 4,515,194 - MIT1002_04027 0.21 -1.1 4,515,194 - MIT1002_04027 0.21 -3.0 4,515,194 - MIT1002_04027 0.21 -4.1 4,515,194 - MIT1002_04027 0.21 -2.9 4,515,227 + MIT1002_04027 0.25 -0.3 4,515,232 - MIT1002_04027 0.25 +0.3 4,515,240 - MIT1002_04027 0.26 +1.1 4,515,255 + MIT1002_04027 0.28 +1.7 4,515,255 + MIT1002_04027 0.28 -2.0 4,515,269 - MIT1002_04027 0.30 -1.6 4,515,271 - MIT1002_04027 0.30 +1.1
Or see this region's nucleotide sequence