Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03892

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
4,357,676	+				+0.2
4,357,677	+				-0.7
4,357,725	-		MIT1002_03891	0.14	-2.3
4,357,726	-		MIT1002_03891	0.14	-0.1
4,357,763	+		MIT1002_03891	0.18	-1.4
4,357,772	+		MIT1002_03891	0.19	-1.4
4,357,912	-		MIT1002_03891	0.33	-0.4
4,357,976	-		MIT1002_03891	0.39	-1.7
4,357,993	-		MIT1002_03891	0.41	-2.3
4,358,060	+		MIT1002_03891	0.48	-0.8
4,358,116	-		MIT1002_03891	0.53	-0.8
4,358,183	-		MIT1002_03891	0.60	-0.7
4,358,255	+		MIT1002_03891	0.67	-0.7
4,358,255	+		MIT1002_03891	0.67	-1.5
4,358,255	+		MIT1002_03891	0.67	-0.4
4,358,255	+		MIT1002_03891	0.67	+1.4
4,358,255	+		MIT1002_03891	0.67	+1.4
4,358,255	-		MIT1002_03891	0.67	-0.7
4,358,263	-		MIT1002_03891	0.68	+0.1
4,358,263	-		MIT1002_03891	0.68	+1.2
4,358,263	-		MIT1002_03891	0.68	+1.6
4,358,263	-		MIT1002_03891	0.68	-0.6
4,358,333	+		MIT1002_03891	0.75	-0.5
4,358,467	-		MIT1002_03891	0.89	-0.8
4,358,469	+		MIT1002_03891	0.89	+0.3
4,358,497	+				+1.0
4,358,503	-				+0.8
4,358,511	-				+1.1
4,358,545	+				+1.5
4,358,546	-				-2.1
4,358,553	-				+0.6
4,358,582	-				-0.2
4,358,601	+				+1.9
4,358,601	+				-0.6
4,358,606	+				+0.3
4,358,614	-				+0.7
4,358,624	+				-0.5
4,358,648	-				+1.1
4,358,709	+				-1.1
4,358,738	-		MIT1002_03892	0.12	-0.4
4,358,738	-		MIT1002_03892	0.12	-1.3
4,358,782	-		MIT1002_03892	0.17	+0.2
4,358,805	+		MIT1002_03892	0.19	+1.1
4,358,805	+		MIT1002_03892	0.19	+1.3
4,358,813	+		MIT1002_03892	0.19	-2.5
4,358,821	-		MIT1002_03892	0.20	+0.8
4,358,826	-		MIT1002_03892	0.21	-3.3
4,358,873	+		MIT1002_03892	0.25	+1.7
4,358,879	-		MIT1002_03892	0.26	+1.0
4,358,881	-		MIT1002_03892	0.26	-0.1
4,358,910	+		MIT1002_03892	0.28	+0.2
4,358,959	-		MIT1002_03892	0.33	+0.3
4,358,969	-		MIT1002_03892	0.34	+1.2
4,358,971	-		MIT1002_03892	0.34	-0.7
4,359,007	-		MIT1002_03892	0.37	+1.0
4,359,040	+		MIT1002_03892	0.40	+0.5
4,359,040	+		MIT1002_03892	0.40	-0.0
4,359,262	+		MIT1002_03892	0.61	-1.0
4,359,265	-		MIT1002_03892	0.61	+1.3
4,359,270	-		MIT1002_03892	0.62	+0.5
4,359,421	-		MIT1002_03892	0.76	+1.1
4,359,447	+		MIT1002_03892	0.78	+1.3
4,359,455	-		MIT1002_03892	0.79	-0.8
4,359,469	+		MIT1002_03892	0.80	-1.7
4,359,487	-		MIT1002_03892	0.82	+0.6
4,359,487	-		MIT1002_03892	0.82	+0.1
4,359,501	+		MIT1002_03892	0.83	-3.5
4,359,560	+		MIT1002_03892	0.89	-0.3
4,359,560	-		MIT1002_03892	0.89	+0.5
4,359,571	+		MIT1002_03892	0.90	-1.6
4,359,633	-				+2.1
4,359,635	+				+0.3
4,359,694	-				-0.3
4,359,844	+				+1.3
4,359,883	-				+0.9
4,359,918	-				-0.4
4,359,968	-				+1.1
4,360,021	-		MIT1002_03893	0.12	+0.4
4,360,021	-		MIT1002_03893	0.12	+0.1
4,360,021	-		MIT1002_03893	0.12	+1.1
4,360,021	-		MIT1002_03893	0.12	+3.0
4,360,041	-		MIT1002_03893	0.13	+0.6
4,360,106	-		MIT1002_03893	0.17	+1.0
4,360,106	-		MIT1002_03893	0.17	-0.8
4,360,108	+		MIT1002_03893	0.17	+0.0
4,360,117	-		MIT1002_03893	0.17	+0.7
4,360,165	+		MIT1002_03893	0.20	-0.0
4,360,165	+		MIT1002_03893	0.20	+0.8
4,360,244	+		MIT1002_03893	0.24	+2.6
4,360,245	-		MIT1002_03893	0.24	+2.9
4,360,264	+		MIT1002_03893	0.25	+0.9
4,360,278	-		MIT1002_03893	0.26	+1.7
4,360,300	-		MIT1002_03893	0.27	+0.3
4,360,349	+		MIT1002_03893	0.29	+1.3
4,360,349	+		MIT1002_03893	0.29	+0.9
4,360,349	+		MIT1002_03893	0.29	+1.1
4,360,357	-		MIT1002_03893	0.30	-1.3
4,360,357	-		MIT1002_03893	0.30	+2.3
4,360,396	+		MIT1002_03893	0.32	-0.9
4,360,504	+		MIT1002_03893	0.37	+0.8
4,360,540	+		MIT1002_03893	0.39	+0.5
4,360,540	-		MIT1002_03893	0.39	-0.5
4,360,653	+		MIT1002_03893	0.45	+0.5