Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03471

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
3,879,095	-		MIT1002_03469	0.82	-0.2
3,879,164	-				-1.8
3,879,166	-				-0.8
3,879,169	+				+0.7
3,879,202	+				+0.1
3,879,203	+				-2.8
3,879,211	-				-1.1
3,879,213	+				+1.0
3,879,294	+				-1.4
3,879,387	-		MIT1002_03470	0.12	-0.9
3,879,406	-		MIT1002_03470	0.15	+0.7
3,879,408	+		MIT1002_03470	0.15	+0.3
3,879,440	+		MIT1002_03470	0.20	-0.5
3,879,483	+		MIT1002_03470	0.26	-0.1
3,879,492	+		MIT1002_03470	0.28	+0.1
3,879,492	-		MIT1002_03470	0.28	+1.6
3,879,550	+		MIT1002_03470	0.36	-2.6
3,879,636	+		MIT1002_03470	0.49	-0.3
3,879,690	-		MIT1002_03470	0.57	-0.2
3,879,718	+		MIT1002_03470	0.61	+3.2
3,879,736	+		MIT1002_03470	0.64	+1.3
3,879,761	-		MIT1002_03470	0.68	-0.6
3,879,887	+		MIT1002_03470	0.86	-0.9
3,879,894	-		MIT1002_03470	0.88	-0.4
3,879,948	+				-0.9
3,879,948	-				+1.0
3,879,949	-				-1.3
3,880,020	-				+2.0
3,880,100	+				+1.6
3,880,305	-		MIT1002_03471	0.27	-1.1
3,880,376	+		MIT1002_03471	0.34	+1.0
3,880,402	-		MIT1002_03471	0.37	+1.1
3,880,409	+		MIT1002_03471	0.38	-0.1
3,880,419	-		MIT1002_03471	0.39	+1.7
3,880,419	-		MIT1002_03471	0.39	+0.5
3,880,459	+		MIT1002_03471	0.44	-0.1
3,880,459	+		MIT1002_03471	0.44	+1.7
3,880,534	+		MIT1002_03471	0.52	-0.3
3,880,539	+		MIT1002_03471	0.52	-1.6
3,880,573	+		MIT1002_03471	0.56	+2.3
3,880,576	-		MIT1002_03471	0.57	+0.1
3,880,613	+		MIT1002_03471	0.61	+1.4
3,880,642	+		MIT1002_03471	0.64	-0.1
3,880,702	+		MIT1002_03471	0.70	+0.1
3,880,724	+		MIT1002_03471	0.73	-1.0
3,880,747	+		MIT1002_03471	0.75	+0.4
3,880,747	+		MIT1002_03471	0.75	-0.1
3,880,755	-		MIT1002_03471	0.76	-0.6
3,880,776	+		MIT1002_03471	0.79	-0.5
3,880,784	+		MIT1002_03471	0.79	+0.3
3,880,784	-		MIT1002_03471	0.79	+1.3
3,880,799	-		MIT1002_03471	0.81	+0.4
3,880,861	+		MIT1002_03471	0.88	+1.0
3,880,861	+		MIT1002_03471	0.88	+1.0
3,880,861	+		MIT1002_03471	0.88	+0.6
3,880,861	+		MIT1002_03471	0.88	-1.5
3,880,861	+		MIT1002_03471	0.88	+0.8
3,880,861	+		MIT1002_03471	0.88	+1.3
3,880,869	-		MIT1002_03471	0.89	-1.3
3,880,869	-		MIT1002_03471	0.89	+1.0
3,880,869	-		MIT1002_03471	0.89	-1.2
3,880,980	-				-1.3
3,881,004	-				-1.6
3,881,009	-				+0.4
3,881,009	-				-2.0
3,881,115	-		MIT1002_03472	0.32	-0.9
3,881,132	-		MIT1002_03472	0.39	+0.3
3,881,215	+		MIT1002_03472	0.73	-1.7
3,881,223	-		MIT1002_03472	0.77	-0.3
3,881,223	-		MIT1002_03472	0.77	-1.9
3,881,223	-		MIT1002_03472	0.77	-0.8
3,881,333	+				+0.4
3,881,333	+				+1.4
3,881,333	+				-1.8
3,881,333	+				+0.3
3,881,341	-				-0.2
3,881,341	-				-0.2
3,881,341	-				+1.3
3,881,341	-				-0.9
3,881,341	-				-0.4
3,881,341	-				+0.8
3,881,341	-				-0.6
3,881,400	+				+3.3
3,881,435	-				-0.8
3,881,486	-				-1.3
3,881,493	+		MIT1002_03473	0.10	-0.6
3,881,500	-		MIT1002_03473	0.11	+0.9
3,881,505	-		MIT1002_03473	0.11	+2.1
3,881,536	-		MIT1002_03473	0.14	+0.6
3,881,539	+		MIT1002_03473	0.14	+2.6
3,881,547	-		MIT1002_03473	0.14	-0.5
3,881,569	+		MIT1002_03473	0.16	-1.9
3,881,574	+		MIT1002_03473	0.16	+0.9
3,881,574	+		MIT1002_03473	0.16	+1.6
3,881,582	-		MIT1002_03473	0.17	-1.6
3,881,582	-		MIT1002_03473	0.17	+1.1
3,881,584	+		MIT1002_03473	0.17	+0.7
3,881,707	+		MIT1002_03473	0.26	+0.4
3,881,707	+		MIT1002_03473	0.26	+1.3
3,881,707	+		MIT1002_03473	0.26	-0.6
3,881,707	+		MIT1002_03473	0.26	+1.6
3,881,707	+		MIT1002_03473	0.26	-1.3
3,881,707	+		MIT1002_03473	0.26	+0.9
3,881,715	-		MIT1002_03473	0.27	+0.4
3,881,715	-		MIT1002_03473	0.27	-0.1
3,881,715	-		MIT1002_03473	0.27	+1.3
3,881,715	-		MIT1002_03473	0.27	-0.6
3,881,715	-		MIT1002_03473	0.27	-0.6
3,881,781	-		MIT1002_03473	0.32	+1.6
3,881,795	-		MIT1002_03473	0.33	+1.3
3,881,835	-		MIT1002_03473	0.36	-1.4
3,881,878	+		MIT1002_03473	0.39	+0.7
3,881,878	+		MIT1002_03473	0.39	+0.6
3,881,878	+		MIT1002_03473	0.39	+1.2
3,881,886	+		MIT1002_03473	0.40	-1.0
3,881,886	-		MIT1002_03473	0.40	-0.5
3,881,900	+		MIT1002_03473	0.41	+0.9
3,881,930	+		MIT1002_03473	0.43	+0.9
3,881,948	-		MIT1002_03473	0.44	-0.6