Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03382

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
3,784,395	-				+0.5
3,784,395	-				+0.4
3,784,449	-				-0.4
3,784,454	-				+1.4
3,784,487	+				-1.4
3,784,495	-				+1.0
3,784,505	-				-1.3
3,784,534	+				-0.7
3,784,577	+		MIT1002_03381	0.13	+0.3
3,784,676	+		MIT1002_03381	0.26	-0.6
3,784,704	+		MIT1002_03381	0.30	-0.6
3,784,704	-		MIT1002_03381	0.30	+1.4
3,784,721	+		MIT1002_03381	0.32	+0.2
3,784,729	-		MIT1002_03381	0.33	-0.1
3,784,806	+		MIT1002_03381	0.44	-1.0
3,784,840	-		MIT1002_03381	0.48	-0.0
3,784,840	-		MIT1002_03381	0.48	+1.3
3,784,850	-		MIT1002_03381	0.49	-1.5
3,784,906	+		MIT1002_03381	0.57	+1.1
3,784,906	+		MIT1002_03381	0.57	+1.6
3,784,914	-		MIT1002_03381	0.58	+0.6
3,784,972	-		MIT1002_03381	0.66	-1.4
3,784,972	-		MIT1002_03381	0.66	-1.1
3,784,972	-		MIT1002_03381	0.66	+0.8
3,784,983	+		MIT1002_03381	0.67	+0.0
3,785,042	-		MIT1002_03381	0.75	-0.3
3,785,046	+		MIT1002_03381	0.75	+0.4
3,785,049	-		MIT1002_03381	0.76	+0.5
3,785,056	+		MIT1002_03381	0.77	+1.0
3,785,056	+		MIT1002_03381	0.77	+0.8
3,785,074	+		MIT1002_03381	0.79	-0.7
3,785,076	+		MIT1002_03381	0.79	-0.6
3,785,089	-		MIT1002_03381	0.81	-1.1
3,785,097	-		MIT1002_03381	0.82	+1.2
3,785,199	+				-0.6
3,785,364	-		MIT1002_03382	0.13	+0.3
3,785,407	+		MIT1002_03382	0.17	+2.0
3,785,415	-		MIT1002_03382	0.18	+2.0
3,785,571	-		MIT1002_03382	0.34	-1.0
3,785,578	+		MIT1002_03382	0.35	-0.5
3,785,672	+		MIT1002_03382	0.44	-1.7
3,785,688	+		MIT1002_03382	0.46	-1.8
3,785,704	+		MIT1002_03382	0.47	-1.0
3,785,765	+		MIT1002_03382	0.53	-1.3
3,785,765	+		MIT1002_03382	0.53	-0.6
3,785,765	+		MIT1002_03382	0.53	-0.9
3,785,765	+		MIT1002_03382	0.53	-0.8
3,785,765	+		MIT1002_03382	0.53	-1.2
3,785,765	+		MIT1002_03382	0.53	+0.2
3,785,765	+		MIT1002_03382	0.53	+0.4
3,785,765	+		MIT1002_03382	0.53	-0.1
3,785,773	-		MIT1002_03382	0.54	-0.6
3,785,773	-		MIT1002_03382	0.54	-2.2
3,785,773	-		MIT1002_03382	0.54	-2.6
3,785,773	-		MIT1002_03382	0.54	-0.6
3,785,773	-		MIT1002_03382	0.54	+1.0
3,785,773	-		MIT1002_03382	0.54	-2.0
3,785,773	-		MIT1002_03382	0.54	-0.3
3,785,773	-		MIT1002_03382	0.54	+1.0
3,785,773	-		MIT1002_03382	0.54	+0.6
3,785,773	-		MIT1002_03382	0.54	+0.2
3,785,775	-		MIT1002_03382	0.54	-1.5
3,785,775	-		MIT1002_03382	0.54	-1.6
3,785,794	+		MIT1002_03382	0.56	-1.9
3,785,794	+		MIT1002_03382	0.56	-0.7
3,785,802	-		MIT1002_03382	0.57	+1.6
3,785,819	-		MIT1002_03382	0.59	-1.0
3,785,824	+		MIT1002_03382	0.59	-1.2
3,785,832	-		MIT1002_03382	0.60	+0.2
3,785,881	-		MIT1002_03382	0.65	-0.2
3,785,899	+		MIT1002_03382	0.67	-0.7
3,785,907	-		MIT1002_03382	0.68	-1.4
3,785,909	+		MIT1002_03382	0.68	+0.7
3,785,916	+		MIT1002_03382	0.69	+1.3
3,785,917	-		MIT1002_03382	0.69	+0.3
3,785,917	-		MIT1002_03382	0.69	-1.1
3,785,989	-		MIT1002_03382	0.76	-1.3
3,786,012	-		MIT1002_03382	0.78	+0.0
3,786,033	-		MIT1002_03382	0.80	+0.8
3,786,119	+		MIT1002_03382	0.89	-2.4
3,786,127	-		MIT1002_03382	0.90	+0.4
3,786,136	-				-0.4
3,786,142	+				+2.0
3,786,277	-				-0.4
3,786,284	+				-0.5
3,786,386	+				+2.1
3,786,610	-		MIT1002_03383	0.63	+1.4
3,786,612	-		MIT1002_03383	0.63	+0.7
3,786,678	+		MIT1002_03383	0.82	+0.5
3,786,678	+		MIT1002_03383	0.82	+1.2
3,786,678	+		MIT1002_03383	0.82	-2.0
3,786,678	+		MIT1002_03383	0.82	-0.5
3,786,726	-				+0.0
3,786,840	-		MIT1002_03384	0.48	-0.7
3,786,840	-		MIT1002_03384	0.48	-1.4
3,786,841	-		MIT1002_03384	0.48	-0.1
3,786,845	-		MIT1002_03384	0.50	-0.0
3,786,845	-		MIT1002_03384	0.50	-0.3
3,786,894	-		MIT1002_03384	0.75	-1.9
3,786,994	+				+0.2
3,787,069	-				-1.5
3,787,118	-		MIT1002_03385	0.17	-1.5
3,787,166	-		MIT1002_03385	0.24	-0.5
3,787,166	-		MIT1002_03385	0.24	+1.2