Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03051

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
3,403,363	-		MIT1002_03050	0.48	-3.5
3,403,390	+		MIT1002_03050	0.51	+0.4
3,403,395	+		MIT1002_03050	0.51	-0.8
3,403,481	-		MIT1002_03050	0.59	+0.3
3,403,571	+		MIT1002_03050	0.67	+0.3
3,403,579	-		MIT1002_03050	0.67	-0.7
3,403,689	+		MIT1002_03050	0.77	-1.9
3,403,697	-		MIT1002_03050	0.78	-2.6
3,403,697	-		MIT1002_03050	0.78	-1.0
3,403,726	+		MIT1002_03050	0.80	-0.8
3,403,745	-		MIT1002_03050	0.82	-1.3
3,403,798	-		MIT1002_03050	0.87	-0.7
3,403,825	-		MIT1002_03050	0.89	+0.1
3,403,887	+				-2.1
3,403,895	-				-2.4
3,403,903	-				-2.8
3,403,979	+				+0.6
3,403,987	-				-1.4
3,403,991	+				+1.6
3,403,999	-				-1.5
3,404,006	-				-1.7
3,404,021	-				-1.7
3,404,024	+				+0.1
3,404,050	-				-1.3
3,404,076	+				-2.0
3,404,076	+				-2.3
3,404,084	-				-0.5
3,404,096	-				+0.2
3,404,111	-				-0.6
3,404,130	+				-0.9
3,404,130	+				-0.3
3,404,151	-				+1.3
3,404,185	+				+0.6
3,404,287	+				+1.3
3,404,287	+				-1.3
3,404,295	-				-1.6
3,404,295	-				-1.1
3,404,351	+				+0.6
3,404,351	-				+1.5
3,404,359	-				-0.1
3,404,376	+				-1.2
3,404,376	+				+0.1
3,404,433	-				-1.3
3,404,436	+				+0.8
3,404,442	-				-0.2
3,404,519	-				+0.8
3,404,553	+		MIT1002_03051	0.11	-1.8
3,404,554	-		MIT1002_03051	0.11	+0.3
3,404,554	-		MIT1002_03051	0.11	+2.2
3,404,650	+		MIT1002_03051	0.16	+1.8
3,404,710	-		MIT1002_03051	0.20	-0.2
3,404,710	-		MIT1002_03051	0.20	-1.9
3,404,712	-		MIT1002_03051	0.20	-1.4
3,404,738	-		MIT1002_03051	0.21	-0.3
3,404,776	+		MIT1002_03051	0.23	+1.0
3,404,807	-		MIT1002_03051	0.25	-1.6
3,404,815	-		MIT1002_03051	0.26	-0.0
3,404,815	-		MIT1002_03051	0.26	-0.3
3,404,820	-		MIT1002_03051	0.26	+0.3
3,404,822	+		MIT1002_03051	0.26	+1.3
3,404,822	+		MIT1002_03051	0.26	-1.0
3,404,835	-		MIT1002_03051	0.27	-0.1
3,404,851	+		MIT1002_03051	0.28	-1.3
3,404,858	-		MIT1002_03051	0.28	-1.3
3,404,881	+		MIT1002_03051	0.29	-1.4
3,404,889	-		MIT1002_03051	0.30	-1.2
3,404,952	+		MIT1002_03051	0.33	-0.7
3,404,957	+		MIT1002_03051	0.33	-0.5
3,404,965	-		MIT1002_03051	0.34	-3.9
3,404,979	-		MIT1002_03051	0.35	-1.6
3,404,979	-		MIT1002_03051	0.35	+0.5
3,404,996	-		MIT1002_03051	0.36	-1.5
3,404,998	+		MIT1002_03051	0.36	-0.9
3,405,006	-		MIT1002_03051	0.36	+0.8
3,405,008	+		MIT1002_03051	0.36	-0.7
3,405,008	+		MIT1002_03051	0.36	-0.5
3,405,029	-		MIT1002_03051	0.37	-0.8
3,405,120	+		MIT1002_03051	0.43	-1.3
3,405,128	-		MIT1002_03051	0.43	-0.3
3,405,137	+		MIT1002_03051	0.43	+1.0
3,405,145	-		MIT1002_03051	0.44	+0.1
3,405,145	-		MIT1002_03051	0.44	-1.6
3,405,155	-		MIT1002_03051	0.44	-0.2
3,405,155	-		MIT1002_03051	0.44	+2.6
3,405,194	+		MIT1002_03051	0.47	-1.7
3,405,202	-		MIT1002_03051	0.47	+0.5
3,405,343	+		MIT1002_03051	0.55	+1.3
3,405,351	-		MIT1002_03051	0.55	-0.6
3,405,351	-		MIT1002_03051	0.55	+2.1
3,405,414	+		MIT1002_03051	0.59	+1.4
3,405,422	-		MIT1002_03051	0.59	-2.3
3,405,424	+		MIT1002_03051	0.59	-0.7
3,405,432	-		MIT1002_03051	0.60	+0.6
3,405,432	-		MIT1002_03051	0.60	+1.6
3,405,503	+		MIT1002_03051	0.64	-0.2
3,405,510	+		MIT1002_03051	0.64	+0.3
3,405,532	+		MIT1002_03051	0.65	-0.1
3,405,547	-		MIT1002_03051	0.66	+0.3
3,405,597	-		MIT1002_03051	0.69	+0.4
3,405,602	-		MIT1002_03051	0.69	-0.4
3,405,630	+		MIT1002_03051	0.71	-0.9
3,405,633	-		MIT1002_03051	0.71	-0.8
3,405,640	+		MIT1002_03051	0.71	-0.4
3,405,643	-		MIT1002_03051	0.72	-1.0
3,405,648	-		MIT1002_03051	0.72	+0.2
3,405,648	-		MIT1002_03051	0.72	-1.6
3,405,648	-		MIT1002_03051	0.72	-1.4
3,405,685	-		MIT1002_03051	0.74	+1.4
3,405,704	+		MIT1002_03051	0.75	-0.3
3,405,712	-		MIT1002_03051	0.75	-1.4
3,405,716	+		MIT1002_03051	0.76	+0.6
3,405,742	+		MIT1002_03051	0.77	+0.6
3,405,750	-		MIT1002_03051	0.77	-2.4
3,405,844	+		MIT1002_03051	0.83	-1.8
3,405,855	+		MIT1002_03051	0.83	+0.6
3,405,898	+		MIT1002_03051	0.86	-1.3
3,405,905	+		MIT1002_03051	0.86	-0.7
3,405,906	-		MIT1002_03051	0.86	+0.3
3,405,913	-		MIT1002_03051	0.87	+0.1
3,405,940	+		MIT1002_03051	0.88	+0.9
3,405,959	+		MIT1002_03051	0.89	-0.4
3,405,959	+		MIT1002_03051	0.89	+1.1
3,405,966	+		MIT1002_03051	0.89	+0.4
3,405,972	-		MIT1002_03051	0.90	-1.9
3,405,977	-				-0.7
3,406,000	+				+0.8
3,406,010	+				-0.7
3,406,010	+				+1.0
3,406,021	+				+0.2
3,406,038	-				+1.4
3,406,038	-				-0.8
3,406,046	+				-0.5
3,406,060	-				-0.0
3,406,065	-				+1.0
3,406,069	+				-2.1
3,406,070	-				-0.0
3,406,198	-				+1.8
3,406,214	-				-1.0
3,406,258	+				+1.2
3,406,258	+				+0.1
3,406,258	+				+0.8
3,406,258	+				+0.4
3,406,265	+				-0.2
3,406,266	-				+2.8
3,406,266	-				-0.5
3,406,266	-				+1.2
3,406,266	-				-1.6
3,406,266	-				-0.1
3,406,266	-				-1.3
3,406,273	-				+0.7
3,406,273	-				-0.4
3,406,273	-				-1.3
3,406,338	+				-0.0
3,406,394	+				-2.3
3,406,406	+				+0.0
3,406,413	+				-0.2
3,406,527	+				+0.8
3,406,721	-				+0.7
3,406,731	-				-0.7
3,406,752	-		MIT1002_03052	0.12	-1.5
3,406,896	+		MIT1002_03052	0.30	-1.0
3,406,896	+		MIT1002_03052	0.30	-1.1
3,406,896	+		MIT1002_03052	0.30	-2.5
3,406,896	+		MIT1002_03052	0.30	-1.4
3,406,904	+		MIT1002_03052	0.31	+0.6
3,406,904	-		MIT1002_03052	0.31	+1.1
3,406,911	-		MIT1002_03052	0.32	-1.9
3,406,977	+		MIT1002_03052	0.40	-1.8
3,406,979	+		MIT1002_03052	0.40	+0.1
3,406,985	-		MIT1002_03052	0.41	+1.2
3,406,987	-		MIT1002_03052	0.41	-2.2
3,406,989	+		MIT1002_03052	0.42	+0.7
3,407,031	-		MIT1002_03052	0.47	+0.9
3,407,044	+		MIT1002_03052	0.48	-1.1
3,407,057	-		MIT1002_03052	0.50	+0.7