Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02879

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
3,195,128	-		MIT1002_02878	0.29	+0.3
3,195,272	+		MIT1002_02878	0.45	-2.2
3,195,280	-		MIT1002_02878	0.45	-1.8
3,195,329	+		MIT1002_02878	0.51	-0.1
3,195,329	+		MIT1002_02878	0.51	+0.5
3,195,329	+		MIT1002_02878	0.51	-1.0
3,195,329	+		MIT1002_02878	0.51	+2.5
3,195,329	+		MIT1002_02878	0.51	-0.1
3,195,337	-		MIT1002_02878	0.52	+0.2
3,195,337	-		MIT1002_02878	0.52	-0.5
3,195,339	+		MIT1002_02878	0.52	-0.2
3,195,389	+		MIT1002_02878	0.58	+0.9
3,195,397	-		MIT1002_02878	0.58	+0.2
3,195,445	-		MIT1002_02878	0.64	+0.4
3,195,460	+		MIT1002_02878	0.65	+1.5
3,195,536	-		MIT1002_02878	0.74	-0.2
3,195,566	-		MIT1002_02878	0.77	-0.1
3,195,598	-		MIT1002_02878	0.81	-0.6
3,195,632	+		MIT1002_02878	0.84	+0.6
3,195,684	+				-0.2
3,195,741	+				+1.2
3,195,757	-				+0.3
3,195,861	-				+0.7
3,195,891	+				+0.2
3,195,960	+				+0.4
3,195,968	-				-0.9
3,195,989	-				+2.5
3,196,049	-				-1.4
3,196,049	-				+0.1
3,196,119	+				-0.2
3,196,150	+				-2.3
3,196,158	-				-0.5
3,196,158	-				+0.3
3,196,236	+				+0.2
3,196,244	-				-0.5
3,196,287	+				-3.1
3,196,287	+				-2.2
3,196,461	-		MIT1002_02879	0.13	-0.1
3,196,522	-		MIT1002_02879	0.15	-2.7
3,196,561	+		MIT1002_02879	0.16	-1.1
3,196,601	-		MIT1002_02879	0.17	-1.9
3,196,612	+		MIT1002_02879	0.18	-2.5
3,196,725	+		MIT1002_02879	0.22	-2.1
3,196,783	-		MIT1002_02879	0.24	-2.6
3,196,808	-		MIT1002_02879	0.25	-3.2
3,196,812	-		MIT1002_02879	0.25	-0.8
3,196,842	+		MIT1002_02879	0.26	-0.7
3,196,842	+		MIT1002_02879	0.26	+2.2
3,197,000	-		MIT1002_02879	0.31	-1.8
3,197,084	-		MIT1002_02879	0.34	-3.2
3,197,102	-		MIT1002_02879	0.35	-2.8
3,197,119	-		MIT1002_02879	0.35	+0.7
3,197,119	-		MIT1002_02879	0.35	-3.2
3,197,153	-		MIT1002_02879	0.36	-0.9
3,197,165	+		MIT1002_02879	0.37	-2.9
3,197,165	+		MIT1002_02879	0.37	+0.4
3,197,173	-		MIT1002_02879	0.37	-1.8
3,197,205	-		MIT1002_02879	0.38	-5.0
3,197,214	+		MIT1002_02879	0.38	-1.7
3,197,244	+		MIT1002_02879	0.39	+1.5
3,197,325	+		MIT1002_02879	0.42	-2.6
3,197,502	-		MIT1002_02879	0.48	-1.3
3,197,505	-		MIT1002_02879	0.48	-2.6
3,197,570	-		MIT1002_02879	0.51	-2.2
3,197,591	+		MIT1002_02879	0.51	-0.3
3,197,627	-		MIT1002_02879	0.52	-0.3
3,197,662	-		MIT1002_02879	0.54	-1.0
3,197,906	+		MIT1002_02879	0.62	-0.3
3,197,906	+		MIT1002_02879	0.62	-1.4
3,197,908	+		MIT1002_02879	0.62	-0.2
3,197,914	-		MIT1002_02879	0.62	-0.4
3,197,916	-		MIT1002_02879	0.62	-1.8
3,197,996	-		MIT1002_02879	0.65	-0.7
3,198,024	+		MIT1002_02879	0.66	+0.5
3,198,032	-		MIT1002_02879	0.66	+0.7
3,198,042	-		MIT1002_02879	0.67	-0.3
3,198,475	+		MIT1002_02879	0.81	-1.8
3,198,516	-		MIT1002_02879	0.83	-1.4
3,198,524	-		MIT1002_02879	0.83	-4.1
3,198,530	+		MIT1002_02879	0.83	-1.9
3,198,560	+		MIT1002_02879	0.84	-2.8
3,198,579	+		MIT1002_02879	0.85	-3.3
3,198,579	+		MIT1002_02879	0.85	-1.4
3,198,623	+		MIT1002_02879	0.86	-1.5
3,198,644	-		MIT1002_02879	0.87	-0.5
3,198,705	+		MIT1002_02879	0.89	-1.3
3,198,705	+		MIT1002_02879	0.89	-2.8
3,198,705	+		MIT1002_02879	0.89	-0.2
3,198,705	+		MIT1002_02879	0.89	-0.2
3,198,705	+		MIT1002_02879	0.89	+1.2
3,198,713	-		MIT1002_02879	0.89	-0.0
3,198,713	-		MIT1002_02879	0.89	-0.2
3,198,715	+		MIT1002_02879	0.90	-0.2
3,198,723	-		MIT1002_02879	0.90	-2.3
3,198,941	+				-0.6
3,198,985	+				+0.3
3,199,000	+				-0.4
3,199,029	+				+1.3
3,199,096	-		MIT1002_02880	0.10	-0.9
3,199,154	-		MIT1002_02880	0.20	+0.1
3,199,252	+		MIT1002_02880	0.36	+0.1
3,199,259	-		MIT1002_02880	0.37	-0.5
3,199,260	-		MIT1002_02880	0.37	+1.0
3,199,284	+		MIT1002_02880	0.41	+0.2
3,199,289	+		MIT1002_02880	0.42	+1.0
3,199,289	+		MIT1002_02880	0.42	+0.3
3,199,289	+		MIT1002_02880	0.42	+0.4
3,199,297	-		MIT1002_02880	0.43	-0.4
3,199,322	-		MIT1002_02880	0.47	+1.1
3,199,322	-		MIT1002_02880	0.47	-0.2
3,199,353	+		MIT1002_02880	0.52	+0.2
3,199,361	-		MIT1002_02880	0.53	-0.4
3,199,481	+		MIT1002_02880	0.73	+1.4
3,199,481	+		MIT1002_02880	0.73	-0.2
3,199,489	-		MIT1002_02880	0.74	+0.0
3,199,555	+		MIT1002_02880	0.85	-0.0
3,199,568	+		MIT1002_02880	0.87	-1.8
3,199,643	+				+0.1
3,199,643	+				+0.6
3,199,659	-				+0.1