Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02496

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
2,784,014	+		MIT1002_02495	0.52	-2.2
2,784,035	+		MIT1002_02495	0.53	+1.9
2,784,069	-		MIT1002_02495	0.55	+1.5
2,784,115	-		MIT1002_02495	0.58	+1.7
2,784,125	-		MIT1002_02495	0.59	-1.6
2,784,136	-		MIT1002_02495	0.59	-0.2
2,784,168	+		MIT1002_02495	0.61	+2.2
2,784,176	-		MIT1002_02495	0.62	+1.5
2,784,204	+		MIT1002_02495	0.63	-2.0
2,784,212	-		MIT1002_02495	0.64	+0.3
2,784,254	-		MIT1002_02495	0.66	-1.3
2,784,344	-		MIT1002_02495	0.72	-0.2
2,784,344	-		MIT1002_02495	0.72	+0.7
2,784,347	+		MIT1002_02495	0.72	+0.7
2,784,362	+		MIT1002_02495	0.73	-0.7
2,784,370	-		MIT1002_02495	0.73	-0.9
2,784,395	+		MIT1002_02495	0.75	+1.6
2,784,408	-		MIT1002_02495	0.76	-0.8
2,784,417	+		MIT1002_02495	0.76	-0.8
2,784,417	+		MIT1002_02495	0.76	-0.8
2,784,436	-		MIT1002_02495	0.77	-0.1
2,784,456	+		MIT1002_02495	0.78	+0.1
2,784,558	+		MIT1002_02495	0.85	-0.9
2,784,558	+		MIT1002_02495	0.85	+0.8
2,784,558	+		MIT1002_02495	0.85	-0.8
2,784,558	+		MIT1002_02495	0.85	+1.0
2,784,566	-		MIT1002_02495	0.85	-1.7
2,784,566	-		MIT1002_02495	0.85	+0.9
2,784,585	-		MIT1002_02495	0.86	+1.6
2,784,585	-		MIT1002_02495	0.86	+0.5
2,784,595	-		MIT1002_02495	0.87	-0.3
2,784,620	+		MIT1002_02495	0.88	-1.0
2,784,646	+		MIT1002_02495	0.90	+0.3
2,784,688	-				-2.2
2,784,732	-				+1.4
2,784,750	+				+1.2
2,784,758	-				-0.8
2,784,761	+				-0.7
2,784,789	+				+0.7
2,784,796	+				-0.7
2,784,815	+				+3.3
2,784,830	+				-0.7
2,784,848	-				-0.9
2,784,893	-				-0.7
2,785,188	-		MIT1002_02496	0.28	-0.5
2,785,228	+		MIT1002_02496	0.32	-0.3
2,785,228	+		MIT1002_02496	0.32	+0.3
2,785,237	-		MIT1002_02496	0.33	-0.5
2,785,246	-		MIT1002_02496	0.34	+0.8
2,785,383	-		MIT1002_02496	0.47	-0.9
2,785,430	+		MIT1002_02496	0.52	+0.1
2,785,433	-		MIT1002_02496	0.52	+1.5
2,785,475	-		MIT1002_02496	0.56	+0.1
2,785,484	+		MIT1002_02496	0.57	-1.2
2,785,522	+		MIT1002_02496	0.61	-0.7
2,785,629	+		MIT1002_02496	0.71	-0.8
2,785,714	-		MIT1002_02496	0.79	-1.0
2,785,772	+		MIT1002_02496	0.85	-1.5
2,785,772	+		MIT1002_02496	0.85	-0.8
2,785,772	+		MIT1002_02496	0.85	+0.2
2,785,772	+		MIT1002_02496	0.85	+0.3
2,785,780	-		MIT1002_02496	0.86	-0.8
2,785,780	-		MIT1002_02496	0.86	+1.2
2,785,780	-		MIT1002_02496	0.86	-0.4
2,785,780	-		MIT1002_02496	0.86	-0.8
2,785,780	-		MIT1002_02496	0.86	+1.5
2,785,829	+				-0.5
2,785,839	+				+1.2
2,785,853	+				+3.5
2,785,861	-				-2.6
2,785,861	-				-1.6
2,785,861	-				+0.2
2,785,863	-				-0.2
2,786,207	-		MIT1002_02497	0.38	+1.3
2,786,224	+		MIT1002_02497	0.42	+0.5
2,786,224	+		MIT1002_02497	0.42	-0.4
2,786,224	+		MIT1002_02497	0.42	+0.9
2,786,232	-		MIT1002_02497	0.44	-1.6
2,786,232	-		MIT1002_02497	0.44	+1.1
2,786,234	+		MIT1002_02497	0.44	+2.2
2,786,259	+		MIT1002_02497	0.50	-1.7
2,786,275	-		MIT1002_02497	0.54	-0.7
2,786,285	-		MIT1002_02497	0.56	-1.4
2,786,357	-		MIT1002_02497	0.73	-1.0
2,786,511	+				+0.4
2,786,519	-				+1.2
2,786,530	+				+0.1
2,786,536	-		MIT1002_02498	0.10	-0.4
2,786,540	+		MIT1002_02498	0.11	+0.7
2,786,541	+		MIT1002_02498	0.11	-1.1
2,786,651	+		MIT1002_02498	0.37	+1.2
2,786,651	+		MIT1002_02498	0.37	+1.8
2,786,651	-		MIT1002_02498	0.37	-0.5
2,786,656	-		MIT1002_02498	0.38	-0.9
2,786,659	-		MIT1002_02498	0.39	-0.8
2,786,668	-		MIT1002_02498	0.41	+2.1
2,786,680	-		MIT1002_02498	0.43	-0.6
2,786,682	+		MIT1002_02498	0.44	-0.6
2,786,684	+		MIT1002_02498	0.44	+1.8
2,786,687	+		MIT1002_02498	0.45	+0.1
2,786,687	+		MIT1002_02498	0.45	-0.2
2,786,690	-		MIT1002_02498	0.46	-1.4
2,786,690	-		MIT1002_02498	0.46	+0.1
2,786,695	-		MIT1002_02498	0.47	+0.5
2,786,695	-		MIT1002_02498	0.47	+0.5
2,786,760	+		MIT1002_02498	0.62	+0.5
2,786,824	-		MIT1002_02498	0.77	-0.6
2,786,828	+		MIT1002_02498	0.77	-0.4
2,786,836	-		MIT1002_02498	0.79	-1.9
2,786,850	+		MIT1002_02498	0.83	+0.5
2,786,851	+		MIT1002_02498	0.83	+0.9
2,786,851	+		MIT1002_02498	0.83	-1.3
2,786,859	-		MIT1002_02498	0.85	-0.3