Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02206

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02204 and MIT1002_02205 are separated by 188 nucleotidesMIT1002_02205 and MIT1002_02206 are separated by 12 nucleotidesMIT1002_02206 and MIT1002_02207 are separated by 12 nucleotides MIT1002_02204: MIT1002_02204 - putative inner membrane transporter yiJE, at 2,464,894 to 2,465,769 _02204 MIT1002_02205: MIT1002_02205 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,465,958 to 2,466,671 _02205 MIT1002_02206: MIT1002_02206 - Outer membrane protein assembly factor BamC precursor, at 2,466,684 to 2,467,787 _02206 MIT1002_02207: MIT1002_02207 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,467,800 to 2,468,684 _02207 Position (kb) 2466 2467 2468Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2465.697 kb on - strandat 2465.751 kb on + strandat 2465.758 kb on + strandat 2465.759 kb on - strandat 2465.759 kb on - strandat 2465.759 kb on - strandat 2465.809 kb on + strandat 2465.819 kb on - strandat 2465.877 kb on + strandat 2465.877 kb on + strandat 2465.885 kb on - strandat 2465.978 kb on - strandat 2465.984 kb on - strandat 2465.985 kb on - strandat 2466.735 kb on - strandat 2466.872 kb on - strand, within MIT1002_02206at 2466.952 kb on - strand, within MIT1002_02206at 2467.127 kb on - strand, within MIT1002_02206at 2467.279 kb on - strand, within MIT1002_02206at 2467.351 kb on - strand, within MIT1002_02206at 2468.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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2,465,697 - -0.5
2,465,751 + -0.7
2,465,758 + +1.2
2,465,759 - +1.2
2,465,759 - -0.4
2,465,759 - -0.6
2,465,809 + -0.4
2,465,819 - -0.5
2,465,877 + +1.1
2,465,877 + +2.2
2,465,885 - +2.2
2,465,978 - -3.3
2,465,984 - -0.5
2,465,985 - -6.6
2,466,735 - -0.6
2,466,872 - MIT1002_02206 0.17 -1.0
2,466,952 - MIT1002_02206 0.24 -2.5
2,467,127 - MIT1002_02206 0.40 -0.5
2,467,279 - MIT1002_02206 0.54 -1.3
2,467,351 - MIT1002_02206 0.60 -0.4
2,468,776 + -2.0

Or see this region's nucleotide sequence