Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01603 and MIT1002_01604 are separated by 216 nucleotides MIT1002_01604 and MIT1002_01605 are separated by 118 nucleotides MIT1002_01605 and MIT1002_01606 are separated by 18 nucleotides MIT1002_01606 and MIT1002_01607 are separated by 290 nucleotides
MIT1002_01603: MIT1002_01603 - Threonine--tRNA ligase, at 1,766,487 to 1,768,403
_01603
MIT1002_01604: MIT1002_01604 - Translation initiation factor IF-3, at 1,768,620 to 1,769,054
_01604
MIT1002_01605: MIT1002_01605 - Ribosomal protein A, at 1,769,173 to 1,769,370
_01605
MIT1002_01606: MIT1002_01606 - 50S ribosomal protein L20, at 1,769,389 to 1,769,745
_01606
MIT1002_01607: MIT1002_01607 - Mannose-1-phosphate guanylyltransferase 1, at 1,770,036 to 1,770,314
_01607
Position (kb) 1768
1769
1770 Strain fitness (log2 ratio) -1
0
1
2 at 1769.851 kb on + strand at 1769.859 kb on - strand at 1769.861 kb on + strand at 1769.869 kb on - strand at 1769.947 kb on + strand at 1770.018 kb on + strand at 1770.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 1,769,851 + +0.6 1,769,859 - -0.3 1,769,861 + +1.4 1,769,869 - -0.3 1,769,947 + +1.5 1,770,018 + -0.0 1,770,018 + +2.1
Or see this region's nucleotide sequence