Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01236

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
1,360,284	-				+0.9
1,360,296	-				+1.2
1,360,436	+				+0.5
1,360,454	-				+2.2
1,360,480	-				-0.4
1,360,629	+		MIT1002_01235	0.24	-1.1
1,360,632	-		MIT1002_01235	0.25	-0.9
1,360,637	-		MIT1002_01235	0.26	-0.9
1,360,670	+		MIT1002_01235	0.36	+0.2
1,360,674	+		MIT1002_01235	0.37	+0.1
1,360,783	+		MIT1002_01235	0.68	-0.7
1,360,876	+				-0.7
1,360,897	-				-0.2
1,360,897	-				+0.2
1,361,136	+				-0.7
1,361,144	-				+1.6
1,361,238	-				-0.7
1,361,238	-				-1.7
1,361,240	-				-0.3
1,361,330	+				-1.8
1,361,330	+				-2.5
1,361,336	-				+1.5
1,361,338	-				+1.3
1,361,486	-				-0.6
1,361,543	-		MIT1002_01236	0.12	-1.2
1,361,553	+		MIT1002_01236	0.13	-0.5
1,361,553	-		MIT1002_01236	0.13	+1.2
1,361,560	+		MIT1002_01236	0.13	+1.1
1,361,587	+		MIT1002_01236	0.14	-0.8
1,361,611	-		MIT1002_01236	0.15	+1.1
1,361,619	+		MIT1002_01236	0.15	-2.7
1,361,619	+		MIT1002_01236	0.15	-0.9
1,361,661	+		MIT1002_01236	0.17	-1.2
1,361,661	+		MIT1002_01236	0.17	-0.8
1,361,669	-		MIT1002_01236	0.17	+1.6
1,361,717	+		MIT1002_01236	0.19	-0.0
1,361,746	-		MIT1002_01236	0.20	+0.2
1,361,748	+		MIT1002_01236	0.20	-1.5
1,361,756	-		MIT1002_01236	0.20	-0.5
1,361,819	+		MIT1002_01236	0.23	-1.0
1,361,848	-		MIT1002_01236	0.24	-0.5
1,361,876	+		MIT1002_01236	0.25	-1.4
1,361,879	-		MIT1002_01236	0.25	-3.2
1,361,891	+		MIT1002_01236	0.26	-2.3
1,361,908	+		MIT1002_01236	0.26	-2.6
1,361,915	+		MIT1002_01236	0.27	+1.3
1,361,915	+		MIT1002_01236	0.27	-1.9
1,361,940	-		MIT1002_01236	0.28	+0.5
1,362,069	+		MIT1002_01236	0.32	+1.0
1,362,165	-		MIT1002_01236	0.36	+0.5
1,362,183	-		MIT1002_01236	0.37	+0.2
1,362,269	-		MIT1002_01236	0.40	+0.3
1,362,281	+		MIT1002_01236	0.41	-0.1
1,362,319	-		MIT1002_01236	0.42	-2.5
1,362,328	+		MIT1002_01236	0.42	-0.3
1,362,360	+		MIT1002_01236	0.44	-2.3
1,362,449	-		MIT1002_01236	0.47	+1.3
1,362,461	-		MIT1002_01236	0.48	-0.8
1,362,506	-		MIT1002_01236	0.49	-1.9
1,362,600	-		MIT1002_01236	0.53	+0.3
1,362,667	-		MIT1002_01236	0.56	-3.0
1,362,710	+		MIT1002_01236	0.57	-4.0
1,362,710	+		MIT1002_01236	0.57	+1.0
1,362,718	-		MIT1002_01236	0.58	-1.3
1,362,768	+		MIT1002_01236	0.59	-2.5
1,362,769	-		MIT1002_01236	0.60	-1.0
1,362,794	+		MIT1002_01236	0.60	-1.9
1,362,794	-		MIT1002_01236	0.60	+0.6
1,362,796	+		MIT1002_01236	0.61	-0.2
1,362,812	+		MIT1002_01236	0.61	+1.2
1,362,852	+		MIT1002_01236	0.63	-1.5
1,362,860	-		MIT1002_01236	0.63	-1.7
1,362,862	-		MIT1002_01236	0.63	-1.8
1,362,917	+		MIT1002_01236	0.65	-2.6
1,362,925	-		MIT1002_01236	0.66	+0.5
1,362,946	+		MIT1002_01236	0.66	-1.8
1,362,963	+		MIT1002_01236	0.67	-2.2
1,363,025	+		MIT1002_01236	0.69	-2.1
1,363,025	+		MIT1002_01236	0.69	+0.3
1,363,043	-		MIT1002_01236	0.70	-0.2
1,363,045	+		MIT1002_01236	0.70	-1.5
1,363,045	+		MIT1002_01236	0.70	+0.8
1,363,055	+		MIT1002_01236	0.71	+1.6
1,363,069	+		MIT1002_01236	0.71	-1.4
1,363,077	-		MIT1002_01236	0.71	-2.3
1,363,077	-		MIT1002_01236	0.71	-0.6
1,363,092	+		MIT1002_01236	0.72	+0.7
1,363,092	+		MIT1002_01236	0.72	-0.5
1,363,110	+		MIT1002_01236	0.73	-3.1
1,363,158	-		MIT1002_01236	0.75	-2.7
1,363,173	-		MIT1002_01236	0.75	-1.2
1,363,217	-		MIT1002_01236	0.77	+0.8
1,363,217	-		MIT1002_01236	0.77	-0.5
1,363,231	-		MIT1002_01236	0.77	-2.8
1,363,322	+		MIT1002_01236	0.81	-1.4
1,363,330	-		MIT1002_01236	0.81	-0.9
1,363,406	+		MIT1002_01236	0.84	+0.2
1,363,452	+		MIT1002_01236	0.86	-2.2
1,363,483	-		MIT1002_01236	0.87	-0.5
1,363,493	+		MIT1002_01236	0.87	-0.2
1,363,493	-		MIT1002_01236	0.87	+1.6
1,363,499	-		MIT1002_01236	0.88	-1.1
1,363,562	+				-1.9
1,363,570	-				+1.6
1,363,580	-				-0.9
1,363,625	+				+0.9
1,363,722	+				-1.3
1,364,038	+		MIT1002_01237	0.22	-2.0
1,364,046	-		MIT1002_01237	0.23	+0.7
1,364,046	-		MIT1002_01237	0.23	-1.8
1,364,046	-		MIT1002_01237	0.23	-2.0
1,364,046	-		MIT1002_01237	0.23	-1.4
1,364,098	+		MIT1002_01237	0.31	+0.3
1,364,144	+		MIT1002_01237	0.39	+0.7
1,364,144	+		MIT1002_01237	0.39	+1.1
1,364,144	+		MIT1002_01237	0.39	-1.1
1,364,144	+		MIT1002_01237	0.39	-1.4
1,364,144	+		MIT1002_01237	0.39	-2.2
1,364,144	+		MIT1002_01237	0.39	-1.2
1,364,144	+		MIT1002_01237	0.39	-1.7
1,364,152	-		MIT1002_01237	0.40	-1.9
1,364,152	-		MIT1002_01237	0.40	-0.5
1,364,152	-		MIT1002_01237	0.40	-0.2
1,364,152	-		MIT1002_01237	0.40	-1.7
1,364,152	-		MIT1002_01237	0.40	-1.2
1,364,152	-		MIT1002_01237	0.40	-0.1
1,364,152	-		MIT1002_01237	0.40	-1.3
1,364,155	+		MIT1002_01237	0.40	-0.4
1,364,210	+		MIT1002_01237	0.49	-1.0
1,364,219	+		MIT1002_01237	0.51	-2.7
1,364,403	-		MIT1002_01237	0.80	-1.7
1,364,418	-		MIT1002_01237	0.82	+0.6
1,364,433	+		MIT1002_01237	0.84	-0.7
1,364,441	+		MIT1002_01237	0.86	-2.3
1,364,461	-		MIT1002_01237	0.89	-1.3
1,364,468	+				+1.1
1,364,479	+				+0.8
1,364,484	-				+2.6
1,364,513	+				-2.1
1,364,591	+				-1.0
1,364,619	-				-0.9
1,364,660	+		MIT1002_01238	0.12	-1.1
1,364,670	+		MIT1002_01238	0.13	+1.9
1,364,677	+		MIT1002_01238	0.14	-0.6
1,364,685	-		MIT1002_01238	0.14	+2.5
1,364,748	+		MIT1002_01238	0.20	-0.7
1,364,805	-		MIT1002_01238	0.26	+0.5