Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00881

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00879 and MIT1002_00880 are separated by 134 nucleotidesMIT1002_00880 and MIT1002_00881 are separated by 86 nucleotidesMIT1002_00881 and MIT1002_00882 are separated by 257 nucleotidesMIT1002_00882 and MIT1002_00883 overlap by 1 nucleotides MIT1002_00879: MIT1002_00879 - Universal stress protein E, at 972,121 to 973,098 _00879 MIT1002_00880: MIT1002_00880 - hypothetical protein, at 973,233 to 973,346 _00880 MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341 _00881 MIT1002_00882: MIT1002_00882 - Sigma-W factor, at 974,599 to 975,129 _00882 MIT1002_00883: MIT1002_00883 - putative transmembrane transcriptional regulator (anti-sigma factor), at 975,129 to 975,887 _00883 Position (kb) 973 974 975Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 972.456 kb on - strand, within MIT1002_00879at 972.470 kb on - strand, within MIT1002_00879at 972.515 kb on + strand, within MIT1002_00879at 972.515 kb on + strand, within MIT1002_00879at 972.517 kb on + strand, within MIT1002_00879at 972.523 kb on - strand, within MIT1002_00879at 972.523 kb on - strand, within MIT1002_00879at 972.530 kb on - strand, within MIT1002_00879at 972.597 kb on - strand, within MIT1002_00879at 972.627 kb on - strand, within MIT1002_00879at 972.664 kb on - strand, within MIT1002_00879at 972.722 kb on - strand, within MIT1002_00879at 972.722 kb on - strand, within MIT1002_00879at 972.745 kb on + strand, within MIT1002_00879at 972.745 kb on + strand, within MIT1002_00879at 972.750 kb on + strand, within MIT1002_00879at 972.819 kb on + strand, within MIT1002_00879at 972.840 kb on + strand, within MIT1002_00879at 972.848 kb on - strand, within MIT1002_00879at 972.894 kb on - strand, within MIT1002_00879at 972.894 kb on - strand, within MIT1002_00879at 973.023 kb on + strandat 973.025 kb on + strandat 973.033 kb on - strandat 973.060 kb on + strandat 973.068 kb on - strandat 973.136 kb on + strandat 973.441 kb on + strandat 973.448 kb on - strandat 973.448 kb on - strandat 973.500 kb on + strandat 973.500 kb on + strandat 973.513 kb on - strandat 973.518 kb on - strandat 973.545 kb on - strand, within MIT1002_00881at 973.547 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.664 kb on + strand, within MIT1002_00881at 973.683 kb on - strand, within MIT1002_00881at 973.697 kb on + strand, within MIT1002_00881at 973.716 kb on + strand, within MIT1002_00881at 973.868 kb on - strand, within MIT1002_00881at 973.868 kb on - strand, within MIT1002_00881at 973.910 kb on - strand, within MIT1002_00881at 973.918 kb on - strand, within MIT1002_00881at 973.928 kb on + strand, within MIT1002_00881at 973.931 kb on - strand, within MIT1002_00881at 973.936 kb on - strand, within MIT1002_00881at 973.961 kb on + strand, within MIT1002_00881at 973.972 kb on + strand, within MIT1002_00881at 973.972 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.037 kb on + strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.069 kb on + strand, within MIT1002_00881at 974.075 kb on - strand, within MIT1002_00881at 974.118 kb on - strand, within MIT1002_00881at 974.194 kb on - strand, within MIT1002_00881at 974.212 kb on - strand, within MIT1002_00881at 974.232 kb on + strand, within MIT1002_00881at 974.255 kb on - strandat 974.264 kb on + strandat 974.314 kb on + strandat 974.315 kb on + strandat 974.342 kb on + strandat 974.427 kb on + strandat 974.435 kb on - strandat 974.466 kb on - strandat 974.556 kb on + strandat 974.561 kb on - strandat 974.644 kb on - strandat 974.705 kb on + strand, within MIT1002_00882at 974.748 kb on - strand, within MIT1002_00882at 974.794 kb on + strand, within MIT1002_00882at 974.802 kb on - strand, within MIT1002_00882at 974.843 kb on + strand, within MIT1002_00882at 974.853 kb on - strand, within MIT1002_00882at 974.901 kb on + strand, within MIT1002_00882at 974.909 kb on - strand, within MIT1002_00882at 974.949 kb on + strand, within MIT1002_00882at 974.949 kb on + strand, within MIT1002_00882at 974.952 kb on - strand, within MIT1002_00882at 974.957 kb on + strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.971 kb on + strand, within MIT1002_00882at 974.971 kb on + strand, within MIT1002_00882at 974.978 kb on + strand, within MIT1002_00882at 975.087 kb on + strandat 975.097 kb on + strandat 975.150 kb on + strandat 975.300 kb on + strand, within MIT1002_00883

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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972,456 - MIT1002_00879 0.34 +1.6
972,470 - MIT1002_00879 0.36 -1.6
972,515 + MIT1002_00879 0.40 +0.0
972,515 + MIT1002_00879 0.40 +2.6
972,517 + MIT1002_00879 0.40 +1.6
972,523 - MIT1002_00879 0.41 -1.3
972,523 - MIT1002_00879 0.41 -1.6
972,530 - MIT1002_00879 0.42 -0.2
972,597 - MIT1002_00879 0.49 +0.6
972,627 - MIT1002_00879 0.52 +0.7
972,664 - MIT1002_00879 0.56 -0.2
972,722 - MIT1002_00879 0.61 +1.6
972,722 - MIT1002_00879 0.61 -0.9
972,745 + MIT1002_00879 0.64 -1.6
972,745 + MIT1002_00879 0.64 +1.1
972,750 + MIT1002_00879 0.64 -0.5
972,819 + MIT1002_00879 0.71 +1.1
972,840 + MIT1002_00879 0.74 +2.2
972,848 - MIT1002_00879 0.74 +0.9
972,894 - MIT1002_00879 0.79 -0.9
972,894 - MIT1002_00879 0.79 +0.5
973,023 + +0.7
973,025 + +0.3
973,033 - +0.7
973,060 + -1.5
973,068 - +0.5
973,136 + +1.4
973,441 + -0.8
973,448 - -1.7
973,448 - -2.9
973,500 + +0.0
973,500 + +0.3
973,513 - +0.0
973,518 - +0.8
973,545 - MIT1002_00881 0.12 -1.3
973,547 + MIT1002_00881 0.13 -1.1
973,595 + MIT1002_00881 0.18 -2.0
973,595 + MIT1002_00881 0.18 +0.0
973,595 + MIT1002_00881 0.18 +0.9
973,664 + MIT1002_00881 0.25 -1.0
973,683 - MIT1002_00881 0.28 -0.4
973,697 + MIT1002_00881 0.29 -0.7
973,716 + MIT1002_00881 0.31 +1.7
973,868 - MIT1002_00881 0.48 -0.5
973,868 - MIT1002_00881 0.48 +1.7
973,910 - MIT1002_00881 0.52 -1.0
973,918 - MIT1002_00881 0.53 +0.7
973,928 + MIT1002_00881 0.54 +1.2
973,931 - MIT1002_00881 0.55 -1.3
973,936 - MIT1002_00881 0.55 -1.8
973,961 + MIT1002_00881 0.58 -1.0
973,972 + MIT1002_00881 0.59 -2.3
973,972 + MIT1002_00881 0.59 -0.5
974,035 + MIT1002_00881 0.66 -1.8
974,035 + MIT1002_00881 0.66 -0.6
974,035 + MIT1002_00881 0.66 +1.7
974,035 + MIT1002_00881 0.66 +0.7
974,037 + MIT1002_00881 0.66 -2.1
974,043 - MIT1002_00881 0.67 -1.2
974,043 - MIT1002_00881 0.67 -0.1
974,043 - MIT1002_00881 0.67 +0.5
974,043 - MIT1002_00881 0.67 -0.2
974,069 + MIT1002_00881 0.70 +1.1
974,075 - MIT1002_00881 0.71 -0.8
974,118 - MIT1002_00881 0.75 -1.6
974,194 - MIT1002_00881 0.84 -4.1
974,212 - MIT1002_00881 0.86 +0.1
974,232 + MIT1002_00881 0.88 -2.4
974,255 - +0.8
974,264 + -0.6
974,314 + +0.1
974,315 + +2.7
974,342 + -0.4
974,427 + -1.2
974,435 - +1.0
974,466 - -0.9
974,556 + -0.6
974,561 - -0.7
974,644 - +2.7
974,705 + MIT1002_00882 0.20 +2.2
974,748 - MIT1002_00882 0.28 -0.4
974,794 + MIT1002_00882 0.37 +1.7
974,802 - MIT1002_00882 0.38 +0.2
974,843 + MIT1002_00882 0.46 -1.7
974,853 - MIT1002_00882 0.48 -0.0
974,901 + MIT1002_00882 0.57 +0.2
974,909 - MIT1002_00882 0.58 +3.4
974,949 + MIT1002_00882 0.66 +1.4
974,949 + MIT1002_00882 0.66 -0.4
974,952 - MIT1002_00882 0.66 +1.3
974,957 + MIT1002_00882 0.67 +1.6
974,957 - MIT1002_00882 0.67 -1.1
974,957 - MIT1002_00882 0.67 +0.9
974,957 - MIT1002_00882 0.67 +0.8
974,971 + MIT1002_00882 0.70 +1.0
974,971 + MIT1002_00882 0.70 -0.2
974,978 + MIT1002_00882 0.71 -1.7
975,087 + +1.9
975,097 + -0.4
975,150 + -0.9
975,300 + MIT1002_00883 0.23 -2.7

Or see this region's nucleotide sequence