Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00689

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00687 and MIT1002_00688 are separated by 37 nucleotidesMIT1002_00688 and MIT1002_00689 are separated by 49 nucleotidesMIT1002_00689 and MIT1002_00690 are separated by 317 nucleotidesMIT1002_00690 and MIT1002_00691 are separated by 5 nucleotides MIT1002_00687: MIT1002_00687 - ribosomal-protein-S5-alanine N-acetyltransferase, at 752,091 to 752,609 _00687 MIT1002_00688: MIT1002_00688 - Peptidyl-prolyl cis-trans isomerase A precursor, at 752,647 to 753,255 _00688 MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537 _00689 MIT1002_00690: MIT1002_00690 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 754,855 to 755,496 _00690 MIT1002_00691: MIT1002_00691 - transcriptional regulator BolA, at 755,502 to 755,822 _00691 Position (kb) 753 754 755Strain fitness (log2 ratio) -2 -1 0 1 2 3at 752.324 kb on + strand, within MIT1002_00687at 752.340 kb on + strand, within MIT1002_00687at 752.381 kb on - strand, within MIT1002_00687at 752.393 kb on + strand, within MIT1002_00687at 752.412 kb on + strand, within MIT1002_00687at 752.419 kb on - strand, within MIT1002_00687at 752.420 kb on - strand, within MIT1002_00687at 752.430 kb on + strand, within MIT1002_00687at 752.437 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.439 kb on + strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.447 kb on - strand, within MIT1002_00687at 752.463 kb on - strand, within MIT1002_00687at 752.489 kb on - strand, within MIT1002_00687at 752.500 kb on + strand, within MIT1002_00687at 752.510 kb on + strand, within MIT1002_00687at 752.515 kb on + strand, within MIT1002_00687at 752.527 kb on + strand, within MIT1002_00687at 752.535 kb on - strand, within MIT1002_00687at 752.544 kb on - strand, within MIT1002_00687at 752.585 kb on + strandat 752.619 kb on + strandat 752.619 kb on - strandat 752.709 kb on + strand, within MIT1002_00688at 752.797 kb on + strand, within MIT1002_00688at 752.807 kb on + strand, within MIT1002_00688at 752.815 kb on - strand, within MIT1002_00688at 752.879 kb on + strand, within MIT1002_00688at 752.889 kb on + strand, within MIT1002_00688at 752.897 kb on - strand, within MIT1002_00688at 752.968 kb on - strand, within MIT1002_00688at 753.050 kb on + strand, within MIT1002_00688at 753.076 kb on + strand, within MIT1002_00688at 753.084 kb on + strand, within MIT1002_00688at 753.097 kb on - strand, within MIT1002_00688at 753.097 kb on - strand, within MIT1002_00688at 753.143 kb on + strand, within MIT1002_00688at 753.151 kb on - strand, within MIT1002_00688at 753.165 kb on + strand, within MIT1002_00688at 753.303 kb on + strandat 753.320 kb on + strandat 753.347 kb on + strandat 753.393 kb on + strandat 753.548 kb on - strand, within MIT1002_00689at 753.634 kb on + strand, within MIT1002_00689at 753.636 kb on - strand, within MIT1002_00689at 753.656 kb on + strand, within MIT1002_00689at 753.713 kb on + strand, within MIT1002_00689at 753.713 kb on + strand, within MIT1002_00689at 753.714 kb on - strand, within MIT1002_00689at 753.734 kb on + strand, within MIT1002_00689at 753.742 kb on - strand, within MIT1002_00689at 753.751 kb on + strand, within MIT1002_00689at 753.793 kb on + strand, within MIT1002_00689at 753.801 kb on - strand, within MIT1002_00689at 753.801 kb on - strand, within MIT1002_00689at 753.872 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.893 kb on - strand, within MIT1002_00689at 753.967 kb on - strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.096 kb on + strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.104 kb on - strand, within MIT1002_00689at 754.113 kb on + strand, within MIT1002_00689at 754.153 kb on + strand, within MIT1002_00689at 754.172 kb on + strand, within MIT1002_00689at 754.232 kb on + strand, within MIT1002_00689at 754.246 kb on - strand, within MIT1002_00689at 754.420 kb on - strandat 754.421 kb on - strandat 754.443 kb on + strandat 754.443 kb on + strandat 754.443 kb on + strandat 754.448 kb on + strandat 754.638 kb on + strandat 754.638 kb on + strandat 754.646 kb on - strandat 754.674 kb on + strandat 754.679 kb on + strandat 754.895 kb on - strandat 754.950 kb on + strand, within MIT1002_00690at 754.950 kb on + strand, within MIT1002_00690at 754.991 kb on - strand, within MIT1002_00690at 755.001 kb on - strand, within MIT1002_00690at 755.053 kb on + strand, within MIT1002_00690at 755.084 kb on + strand, within MIT1002_00690at 755.091 kb on - strand, within MIT1002_00690at 755.149 kb on - strand, within MIT1002_00690at 755.156 kb on + strand, within MIT1002_00690at 755.186 kb on - strand, within MIT1002_00690at 755.190 kb on + strand, within MIT1002_00690at 755.224 kb on + strand, within MIT1002_00690at 755.224 kb on + strand, within MIT1002_00690at 755.232 kb on - strand, within MIT1002_00690at 755.279 kb on + strand, within MIT1002_00690at 755.295 kb on + strand, within MIT1002_00690at 755.382 kb on + strand, within MIT1002_00690at 755.385 kb on - strand, within MIT1002_00690at 755.428 kb on - strand, within MIT1002_00690at 755.440 kb on - strandat 755.453 kb on + strandat 755.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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752,324 + MIT1002_00687 0.45 +0.2
752,340 + MIT1002_00687 0.48 -2.0
752,381 - MIT1002_00687 0.56 -2.6
752,393 + MIT1002_00687 0.58 +0.8
752,412 + MIT1002_00687 0.62 +0.8
752,419 - MIT1002_00687 0.63 -0.3
752,420 - MIT1002_00687 0.63 +0.8
752,430 + MIT1002_00687 0.65 +1.0
752,437 + MIT1002_00687 0.67 +0.6
752,439 + MIT1002_00687 0.67 +1.6
752,439 + MIT1002_00687 0.67 -1.4
752,439 + MIT1002_00687 0.67 +1.7
752,447 - MIT1002_00687 0.69 -2.0
752,447 - MIT1002_00687 0.69 +0.0
752,463 - MIT1002_00687 0.72 +0.7
752,489 - MIT1002_00687 0.77 -0.5
752,500 + MIT1002_00687 0.79 +0.9
752,510 + MIT1002_00687 0.81 +1.3
752,515 + MIT1002_00687 0.82 +0.4
752,527 + MIT1002_00687 0.84 +0.8
752,535 - MIT1002_00687 0.86 +0.4
752,544 - MIT1002_00687 0.87 +0.5
752,585 + +0.6
752,619 + -0.5
752,619 - -1.0
752,709 + MIT1002_00688 0.10 -2.4
752,797 + MIT1002_00688 0.25 +1.0
752,807 + MIT1002_00688 0.26 +0.0
752,815 - MIT1002_00688 0.28 +0.9
752,879 + MIT1002_00688 0.38 -0.4
752,889 + MIT1002_00688 0.40 +0.3
752,897 - MIT1002_00688 0.41 -0.5
752,968 - MIT1002_00688 0.53 +0.9
753,050 + MIT1002_00688 0.66 +0.2
753,076 + MIT1002_00688 0.70 -0.2
753,084 + MIT1002_00688 0.72 +1.6
753,097 - MIT1002_00688 0.74 -1.1
753,097 - MIT1002_00688 0.74 +0.3
753,143 + MIT1002_00688 0.81 +0.4
753,151 - MIT1002_00688 0.83 -0.1
753,165 + MIT1002_00688 0.85 +0.2
753,303 + +1.3
753,320 + -1.1
753,347 + +2.3
753,393 + +1.1
753,548 - MIT1002_00689 0.20 +0.6
753,634 + MIT1002_00689 0.27 +0.2
753,636 - MIT1002_00689 0.27 +0.3
753,656 + MIT1002_00689 0.28 -1.6
753,713 + MIT1002_00689 0.33 +1.6
753,713 + MIT1002_00689 0.33 -1.9
753,714 - MIT1002_00689 0.33 -1.2
753,734 + MIT1002_00689 0.35 -2.0
753,742 - MIT1002_00689 0.35 -0.2
753,751 + MIT1002_00689 0.36 -1.3
753,793 + MIT1002_00689 0.40 +1.3
753,801 - MIT1002_00689 0.40 +0.5
753,801 - MIT1002_00689 0.40 +1.9
753,872 - MIT1002_00689 0.46 +1.1
753,893 - MIT1002_00689 0.48 -0.7
753,893 - MIT1002_00689 0.48 +2.8
753,967 - MIT1002_00689 0.54 -0.2
754,096 + MIT1002_00689 0.64 +1.6
754,096 + MIT1002_00689 0.64 -1.2
754,104 - MIT1002_00689 0.65 +0.0
754,104 - MIT1002_00689 0.65 +1.3
754,113 + MIT1002_00689 0.66 +2.3
754,153 + MIT1002_00689 0.69 -0.3
754,172 + MIT1002_00689 0.70 -0.9
754,232 + MIT1002_00689 0.75 +0.7
754,246 - MIT1002_00689 0.76 -0.1
754,420 - -1.3
754,421 - +0.4
754,443 + -0.1
754,443 + -1.7
754,443 + -0.1
754,448 + +0.9
754,638 + -0.1
754,638 + +0.5
754,646 - +0.4
754,674 + +0.4
754,679 + -1.8
754,895 - -0.6
754,950 + MIT1002_00690 0.15 -0.1
754,950 + MIT1002_00690 0.15 +0.5
754,991 - MIT1002_00690 0.21 +1.6
755,001 - MIT1002_00690 0.23 +1.5
755,053 + MIT1002_00690 0.31 -0.2
755,084 + MIT1002_00690 0.36 +0.1
755,091 - MIT1002_00690 0.37 -1.5
755,149 - MIT1002_00690 0.46 +0.5
755,156 + MIT1002_00690 0.47 -0.2
755,186 - MIT1002_00690 0.52 -0.4
755,190 + MIT1002_00690 0.52 +0.9
755,224 + MIT1002_00690 0.57 -0.8
755,224 + MIT1002_00690 0.57 -1.6
755,232 - MIT1002_00690 0.59 -0.8
755,279 + MIT1002_00690 0.66 +0.4
755,295 + MIT1002_00690 0.69 +1.9
755,382 + MIT1002_00690 0.82 -0.5
755,385 - MIT1002_00690 0.83 -2.1
755,428 - MIT1002_00690 0.89 +0.0
755,440 - -0.5
755,453 + -0.0
755,486 + +0.8

Or see this region's nucleotide sequence