Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00649

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00648 and MIT1002_00649 are separated by 3 nucleotidesMIT1002_00649 and MIT1002_00650 are separated by 4 nucleotidesMIT1002_00650 and MIT1002_00651 are separated by 8 nucleotides MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158 _00648 MIT1002_00649: MIT1002_00649 - Sulfite exporter TauE/SafE, at 705,162 to 705,968 _00649 MIT1002_00650: MIT1002_00650 - Prolipoprotein diacylglyceryl transferase, at 705,973 to 706,785 _00650 MIT1002_00651: MIT1002_00651 - Thymidylate synthase, at 706,794 to 707,627 _00651 Position (kb) 705 706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 704.180 kb on - strand, within MIT1002_00648at 704.271 kb on + strand, within MIT1002_00648at 704.272 kb on + strand, within MIT1002_00648at 704.272 kb on + strand, within MIT1002_00648at 704.279 kb on - strand, within MIT1002_00648at 704.280 kb on - strand, within MIT1002_00648at 704.280 kb on - strand, within MIT1002_00648at 704.287 kb on - strand, within MIT1002_00648at 704.419 kb on + strand, within MIT1002_00648at 704.424 kb on + strand, within MIT1002_00648at 704.479 kb on + strand, within MIT1002_00648at 704.485 kb on + strand, within MIT1002_00648at 704.493 kb on - strand, within MIT1002_00648at 704.516 kb on + strand, within MIT1002_00648at 704.539 kb on + strand, within MIT1002_00648at 704.544 kb on + strand, within MIT1002_00648at 704.547 kb on - strand, within MIT1002_00648at 704.547 kb on - strand, within MIT1002_00648at 704.552 kb on - strand, within MIT1002_00648at 704.603 kb on - strand, within MIT1002_00648at 704.665 kb on - strand, within MIT1002_00648at 704.676 kb on - strand, within MIT1002_00648at 704.806 kb on - strand, within MIT1002_00648at 704.834 kb on - strand, within MIT1002_00648at 704.964 kb on + strandat 704.997 kb on - strandat 704.997 kb on - strandat 705.040 kb on + strandat 705.043 kb on - strandat 705.046 kb on + strandat 705.070 kb on + strandat 705.084 kb on + strandat 705.122 kb on - strandat 705.122 kb on - strandat 705.183 kb on + strandat 705.183 kb on - strandat 705.191 kb on - strandat 705.288 kb on + strand, within MIT1002_00649at 705.305 kb on - strand, within MIT1002_00649at 705.403 kb on - strand, within MIT1002_00649at 705.419 kb on + strand, within MIT1002_00649at 705.419 kb on + strand, within MIT1002_00649at 705.427 kb on - strand, within MIT1002_00649at 705.427 kb on - strand, within MIT1002_00649at 705.429 kb on + strand, within MIT1002_00649at 705.429 kb on + strand, within MIT1002_00649at 705.437 kb on - strand, within MIT1002_00649at 705.437 kb on - strand, within MIT1002_00649at 705.437 kb on - strand, within MIT1002_00649at 705.437 kb on - strand, within MIT1002_00649at 705.437 kb on - strand, within MIT1002_00649at 705.494 kb on + strand, within MIT1002_00649at 705.494 kb on + strand, within MIT1002_00649at 705.502 kb on - strand, within MIT1002_00649at 705.623 kb on - strand, within MIT1002_00649at 705.623 kb on - strand, within MIT1002_00649at 705.638 kb on - strand, within MIT1002_00649at 705.656 kb on + strand, within MIT1002_00649at 705.754 kb on + strand, within MIT1002_00649at 705.787 kb on + strand, within MIT1002_00649at 705.799 kb on + strand, within MIT1002_00649at 705.837 kb on + strand, within MIT1002_00649at 705.844 kb on + strand, within MIT1002_00649at 705.844 kb on + strand, within MIT1002_00649at 705.844 kb on + strand, within MIT1002_00649at 705.844 kb on + strand, within MIT1002_00649at 705.863 kb on + strand, within MIT1002_00649at 705.868 kb on + strand, within MIT1002_00649at 705.868 kb on + strand, within MIT1002_00649at 706.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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704,180 - MIT1002_00648 0.58 -4.2
704,271 + MIT1002_00648 0.62 -1.0
704,272 + MIT1002_00648 0.62 +1.0
704,272 + MIT1002_00648 0.62 -2.1
704,279 - MIT1002_00648 0.62 -0.3
704,280 - MIT1002_00648 0.62 +0.8
704,280 - MIT1002_00648 0.62 -0.9
704,287 - MIT1002_00648 0.62 -0.5
704,419 + MIT1002_00648 0.68 -2.6
704,424 + MIT1002_00648 0.68 -4.6
704,479 + MIT1002_00648 0.71 -4.4
704,485 + MIT1002_00648 0.71 -0.2
704,493 - MIT1002_00648 0.71 -1.7
704,516 + MIT1002_00648 0.72 -1.7
704,539 + MIT1002_00648 0.73 -1.2
704,544 + MIT1002_00648 0.73 -3.9
704,547 - MIT1002_00648 0.74 -1.9
704,547 - MIT1002_00648 0.74 +0.0
704,552 - MIT1002_00648 0.74 +0.4
704,603 - MIT1002_00648 0.76 -1.2
704,665 - MIT1002_00648 0.79 -2.0
704,676 - MIT1002_00648 0.79 -0.1
704,806 - MIT1002_00648 0.85 -1.7
704,834 - MIT1002_00648 0.86 +0.8
704,964 + -2.0
704,997 - -2.1
704,997 - -1.1
705,040 + -1.7
705,043 - -2.3
705,046 + -3.3
705,070 + -0.3
705,084 + -2.0
705,122 - +1.6
705,122 - +0.4
705,183 + -0.6
705,183 - +0.0
705,191 - +0.1
705,288 + MIT1002_00649 0.16 -2.0
705,305 - MIT1002_00649 0.18 -1.0
705,403 - MIT1002_00649 0.30 +1.6
705,419 + MIT1002_00649 0.32 +0.5
705,419 + MIT1002_00649 0.32 +0.3
705,427 - MIT1002_00649 0.33 +1.6
705,427 - MIT1002_00649 0.33 -2.1
705,429 + MIT1002_00649 0.33 -0.1
705,429 + MIT1002_00649 0.33 -0.1
705,437 - MIT1002_00649 0.34 -1.1
705,437 - MIT1002_00649 0.34 +1.0
705,437 - MIT1002_00649 0.34 -0.6
705,437 - MIT1002_00649 0.34 -0.8
705,437 - MIT1002_00649 0.34 -1.0
705,494 + MIT1002_00649 0.41 +0.4
705,494 + MIT1002_00649 0.41 -1.2
705,502 - MIT1002_00649 0.42 -0.5
705,623 - MIT1002_00649 0.57 -1.4
705,623 - MIT1002_00649 0.57 +0.6
705,638 - MIT1002_00649 0.59 +1.3
705,656 + MIT1002_00649 0.61 -0.2
705,754 + MIT1002_00649 0.73 -1.9
705,787 + MIT1002_00649 0.77 -1.4
705,799 + MIT1002_00649 0.79 -0.6
705,837 + MIT1002_00649 0.84 +0.6
705,844 + MIT1002_00649 0.85 +0.7
705,844 + MIT1002_00649 0.85 -0.6
705,844 + MIT1002_00649 0.85 -0.2
705,844 + MIT1002_00649 0.85 -2.0
705,863 + MIT1002_00649 0.87 -0.1
705,868 + MIT1002_00649 0.87 -0.9
705,868 + MIT1002_00649 0.87 -1.2
706,727 + -0.2

Or see this region's nucleotide sequence