Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00646

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00645 and MIT1002_00646 are separated by 31 nucleotidesMIT1002_00646 and MIT1002_00647 are separated by 113 nucleotidesMIT1002_00647 and MIT1002_00648 are separated by 96 nucleotides MIT1002_00645: MIT1002_00645 - hypothetical protein, at 700,299 to 701,378 _00645 MIT1002_00646: MIT1002_00646 - Methyl-directed mismatch repair protein, at 701,410 to 702,087 _00646 MIT1002_00647: MIT1002_00647 - RNA pyrophosphohydrolase, at 702,201 to 702,743 _00647 MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158 _00648 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 700.414 kb on - strand, within MIT1002_00645at 700.424 kb on + strand, within MIT1002_00645at 700.424 kb on + strand, within MIT1002_00645at 700.429 kb on + strand, within MIT1002_00645at 700.443 kb on - strand, within MIT1002_00645at 700.468 kb on + strand, within MIT1002_00645at 700.479 kb on - strand, within MIT1002_00645at 700.484 kb on - strand, within MIT1002_00645at 700.484 kb on - strand, within MIT1002_00645at 700.488 kb on + strand, within MIT1002_00645at 700.551 kb on - strand, within MIT1002_00645at 700.597 kb on - strand, within MIT1002_00645at 700.688 kb on + strand, within MIT1002_00645at 700.705 kb on - strand, within MIT1002_00645at 700.705 kb on - strand, within MIT1002_00645at 700.732 kb on + strand, within MIT1002_00645at 700.745 kb on + strand, within MIT1002_00645at 700.750 kb on + strand, within MIT1002_00645at 700.753 kb on - strand, within MIT1002_00645at 700.790 kb on + strand, within MIT1002_00645at 700.798 kb on - strand, within MIT1002_00645at 700.803 kb on - strand, within MIT1002_00645at 700.854 kb on - strand, within MIT1002_00645at 700.856 kb on - strand, within MIT1002_00645at 700.880 kb on - strand, within MIT1002_00645at 700.931 kb on - strand, within MIT1002_00645at 700.993 kb on + strand, within MIT1002_00645at 701.050 kb on + strand, within MIT1002_00645at 701.050 kb on + strand, within MIT1002_00645at 701.058 kb on - strand, within MIT1002_00645at 701.094 kb on + strand, within MIT1002_00645at 701.096 kb on + strand, within MIT1002_00645at 701.139 kb on - strand, within MIT1002_00645at 701.139 kb on - strand, within MIT1002_00645at 701.139 kb on - strand, within MIT1002_00645at 701.145 kb on - strand, within MIT1002_00645at 701.260 kb on + strand, within MIT1002_00645at 701.260 kb on + strand, within MIT1002_00645at 701.260 kb on + strand, within MIT1002_00645at 701.260 kb on + strand, within MIT1002_00645at 701.354 kb on + strandat 701.392 kb on - strandat 701.397 kb on - strandat 701.487 kb on - strand, within MIT1002_00646at 701.515 kb on + strand, within MIT1002_00646at 701.515 kb on + strand, within MIT1002_00646at 701.566 kb on - strand, within MIT1002_00646at 701.590 kb on - strand, within MIT1002_00646at 701.597 kb on + strand, within MIT1002_00646at 701.621 kb on + strand, within MIT1002_00646at 701.678 kb on + strand, within MIT1002_00646at 701.697 kb on - strand, within MIT1002_00646at 701.703 kb on + strand, within MIT1002_00646at 701.716 kb on + strand, within MIT1002_00646at 701.885 kb on - strand, within MIT1002_00646at 701.887 kb on + strand, within MIT1002_00646at 702.169 kb on + strandat 702.181 kb on - strandat 702.236 kb on - strandat 702.287 kb on - strand, within MIT1002_00647at 702.305 kb on - strand, within MIT1002_00647at 702.421 kb on + strand, within MIT1002_00647at 702.629 kb on + strand, within MIT1002_00647at 702.632 kb on - strand, within MIT1002_00647at 702.677 kb on + strand, within MIT1002_00647at 702.677 kb on + strand, within MIT1002_00647at 702.677 kb on + strand, within MIT1002_00647at 702.682 kb on + strand, within MIT1002_00647at 702.685 kb on - strand, within MIT1002_00647at 702.690 kb on - strandat 702.690 kb on - strandat 702.690 kb on - strandat 702.768 kb on + strandat 702.776 kb on - strandat 702.776 kb on - strandat 702.783 kb on + strandat 702.786 kb on - strandat 702.791 kb on - strandat 702.862 kb on + strandat 702.930 kb on - strandat 702.932 kb on + strandat 702.932 kb on + strandat 702.932 kb on + strandat 702.932 kb on + strandat 702.940 kb on - strandat 702.940 kb on - strandat 702.982 kb on + strandat 702.982 kb on + strandat 702.996 kb on + strandat 703.038 kb on + strandat 703.075 kb on + strand, within MIT1002_00648

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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700,414 - MIT1002_00645 0.11 +0.4
700,424 + MIT1002_00645 0.12 -1.1
700,424 + MIT1002_00645 0.12 -0.5
700,429 + MIT1002_00645 0.12 +0.2
700,443 - MIT1002_00645 0.13 -0.6
700,468 + MIT1002_00645 0.16 -0.9
700,479 - MIT1002_00645 0.17 -0.9
700,484 - MIT1002_00645 0.17 -0.1
700,484 - MIT1002_00645 0.17 -0.3
700,488 + MIT1002_00645 0.17 +1.4
700,551 - MIT1002_00645 0.23 -1.2
700,597 - MIT1002_00645 0.28 -3.0
700,688 + MIT1002_00645 0.36 -1.9
700,705 - MIT1002_00645 0.38 +0.6
700,705 - MIT1002_00645 0.38 -1.5
700,732 + MIT1002_00645 0.40 +0.0
700,745 + MIT1002_00645 0.41 -0.4
700,750 + MIT1002_00645 0.42 -0.7
700,753 - MIT1002_00645 0.42 -1.0
700,790 + MIT1002_00645 0.45 +0.4
700,798 - MIT1002_00645 0.46 -1.4
700,803 - MIT1002_00645 0.47 -0.4
700,854 - MIT1002_00645 0.51 -1.2
700,856 - MIT1002_00645 0.52 +0.2
700,880 - MIT1002_00645 0.54 +0.7
700,931 - MIT1002_00645 0.59 +2.0
700,993 + MIT1002_00645 0.64 -0.6
701,050 + MIT1002_00645 0.70 -0.7
701,050 + MIT1002_00645 0.70 +0.0
701,058 - MIT1002_00645 0.70 -0.0
701,094 + MIT1002_00645 0.74 -0.4
701,096 + MIT1002_00645 0.74 -2.8
701,139 - MIT1002_00645 0.78 -0.3
701,139 - MIT1002_00645 0.78 +0.8
701,139 - MIT1002_00645 0.78 +2.0
701,145 - MIT1002_00645 0.78 -1.1
701,260 + MIT1002_00645 0.89 -0.8
701,260 + MIT1002_00645 0.89 -1.2
701,260 + MIT1002_00645 0.89 -0.2
701,260 + MIT1002_00645 0.89 -0.4
701,354 + -3.1
701,392 - -0.4
701,397 - +0.6
701,487 - MIT1002_00646 0.11 -0.4
701,515 + MIT1002_00646 0.15 +0.6
701,515 + MIT1002_00646 0.15 +1.6
701,566 - MIT1002_00646 0.23 -0.5
701,590 - MIT1002_00646 0.27 -0.5
701,597 + MIT1002_00646 0.28 -0.4
701,621 + MIT1002_00646 0.31 +0.6
701,678 + MIT1002_00646 0.40 -1.1
701,697 - MIT1002_00646 0.42 +1.3
701,703 + MIT1002_00646 0.43 -1.9
701,716 + MIT1002_00646 0.45 -2.0
701,885 - MIT1002_00646 0.70 -2.3
701,887 + MIT1002_00646 0.70 +0.3
702,169 + -1.3
702,181 - -2.3
702,236 - -0.3
702,287 - MIT1002_00647 0.16 -3.0
702,305 - MIT1002_00647 0.19 +1.6
702,421 + MIT1002_00647 0.41 -0.8
702,629 + MIT1002_00647 0.79 -2.7
702,632 - MIT1002_00647 0.79 -0.8
702,677 + MIT1002_00647 0.88 -0.1
702,677 + MIT1002_00647 0.88 +1.6
702,677 + MIT1002_00647 0.88 -2.4
702,682 + MIT1002_00647 0.89 +1.6
702,685 - MIT1002_00647 0.89 -2.2
702,690 - -2.0
702,690 - -4.2
702,690 - -1.3
702,768 + +0.1
702,776 - -2.2
702,776 - +0.3
702,783 + +0.2
702,786 - -4.4
702,791 - -0.8
702,862 + -0.4
702,930 - -1.2
702,932 + -2.8
702,932 + -1.9
702,932 + -0.8
702,932 + -1.0
702,940 - -1.9
702,940 - -4.2
702,982 + -1.2
702,982 + +0.2
702,996 + -1.0
703,038 + -0.2
703,075 + MIT1002_00648 0.10 -1.0

Or see this region's nucleotide sequence