Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00608 and MIT1002_00609 are separated by 5 nucleotides MIT1002_00609 and MIT1002_00610 are separated by 81 nucleotides MIT1002_00610 and MIT1002_00611 are separated by 218 nucleotides MIT1002_00611 and MIT1002_00612 overlap by 1 nucleotides
MIT1002_00608: MIT1002_00608 - heat shock protein HtpX, at 662,584 to 663,579
_00608
MIT1002_00609: MIT1002_00609 - Regulatory protein BlaI, at 663,585 to 663,965
_00609
MIT1002_00610: MIT1002_00610 - hypothetical protein, at 664,047 to 664,400
_00610
MIT1002_00611: MIT1002_00611 - hypothetical protein, at 664,619 to 664,789
_00611
MIT1002_00612: MIT1002_00612 - death-on-curing family protein, at 664,789 to 665,190
_00612
Position (kb) 663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 662.628 kb on + strand at 662.636 kb on - strand at 662.677 kb on + strand at 662.685 kb on - strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.737 kb on + strand, within MIT1002_00608 at 662.745 kb on - strand, within MIT1002_00608 at 662.747 kb on + strand, within MIT1002_00608 at 662.796 kb on - strand, within MIT1002_00608 at 662.799 kb on + strand, within MIT1002_00608 at 662.807 kb on + strand, within MIT1002_00608 at 662.807 kb on - strand, within MIT1002_00608 at 662.854 kb on + strand, within MIT1002_00608 at 662.890 kb on - strand, within MIT1002_00608 at 662.980 kb on - strand, within MIT1002_00608 at 663.042 kb on + strand, within MIT1002_00608 at 663.252 kb on + strand, within MIT1002_00608 at 663.273 kb on + strand, within MIT1002_00608 at 663.355 kb on - strand, within MIT1002_00608 at 663.430 kb on + strand, within MIT1002_00608 at 663.438 kb on - strand, within MIT1002_00608 at 663.531 kb on + strand at 663.536 kb on - strand at 663.624 kb on + strand, within MIT1002_00609 at 663.668 kb on - strand, within MIT1002_00609 at 663.786 kb on - strand, within MIT1002_00609 at 663.807 kb on + strand, within MIT1002_00609 at 663.845 kb on + strand, within MIT1002_00609 at 663.865 kb on + strand, within MIT1002_00609 at 663.989 kb on + strand at 664.063 kb on - strand at 664.067 kb on + strand at 664.128 kb on - strand, within MIT1002_00610 at 664.256 kb on - strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.343 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 662,628 + +0.2 662,636 - -0.1 662,677 + -1.1 662,685 - MIT1002_00608 0.10 +1.7 662,737 + MIT1002_00608 0.15 -0.9 662,737 + MIT1002_00608 0.15 -1.3 662,737 + MIT1002_00608 0.15 -0.2 662,737 + MIT1002_00608 0.15 -0.8 662,745 - MIT1002_00608 0.16 +0.2 662,747 + MIT1002_00608 0.16 +1.3 662,796 - MIT1002_00608 0.21 +1.3 662,799 + MIT1002_00608 0.22 +0.3 662,807 + MIT1002_00608 0.22 -1.0 662,807 - MIT1002_00608 0.22 +0.5 662,854 + MIT1002_00608 0.27 +0.0 662,890 - MIT1002_00608 0.31 -0.8 662,980 - MIT1002_00608 0.40 -0.8 663,042 + MIT1002_00608 0.46 -1.3 663,252 + MIT1002_00608 0.67 -0.5 663,273 + MIT1002_00608 0.69 +0.0 663,355 - MIT1002_00608 0.77 +1.8 663,430 + MIT1002_00608 0.85 +4.0 663,438 - MIT1002_00608 0.86 +0.6 663,531 + -0.2 663,536 - -0.2 663,624 + MIT1002_00609 0.10 +2.3 663,668 - MIT1002_00609 0.22 +0.2 663,786 - MIT1002_00609 0.53 -0.8 663,807 + MIT1002_00609 0.58 +0.8 663,845 + MIT1002_00609 0.68 -0.0 663,865 + MIT1002_00609 0.73 -0.8 663,989 + -1.6 664,063 - -0.7 664,067 + -0.3 664,128 - MIT1002_00610 0.23 -0.8 664,256 - MIT1002_00610 0.59 +0.2 664,324 + MIT1002_00610 0.78 +0.6 664,324 + MIT1002_00610 0.78 +0.5 664,332 - MIT1002_00610 0.81 +1.1 664,332 - MIT1002_00610 0.81 -0.3 664,332 - MIT1002_00610 0.81 +0.0 664,343 - MIT1002_00610 0.84 +0.8 664,353 - MIT1002_00610 0.86 -3.0 664,353 - MIT1002_00610 0.86 +0.0
Or see this region's nucleotide sequence